Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   107426
Name   oriT_pMBLR00 in_silico
Organism   Leuconostoc mesenteroides subsp. mesenteroides
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NC_019353 (1582..1606 [+], 25 nt)
oriT length   25 nt
IRs (inverted repeats)      1..9, 16..24  (TAAAGTATA..TATACTTTA)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 25 nt

>oriT_pMBLR00
TAAAGTATAGTGGGTTATACTTTAC

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   4965 GenBank   WP_015062921
Name   mobV_HS785_RS00020_pMBLR00 insolico UniProt ID   I6Q886
Length   361 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 361 a.a.        Molecular weight: 42157.40 Da        Isoelectric Point: 8.8881

>WP_015062921.1 MULTISPECIES: MobV family relaxase [Leuconostoc]
MSFVVARMTKLKADNLVGIGNHDQRKTTNHSNEDIDVSRSHLNYDLVAGRTDNFKTDIEAYINENKASKR
AVRKDAVLVNEWILTSDKDFFEQLDEVETRKYFETAKQYFADNYGDENIRYAVVHLDEKTPHMHMGIVPF
DDDRKLSAKRIFNREALQRIQEELPQYLKENGFDVQRGNKNKERKNLSVPEYKTMREDLKKIETEKQETQ
AKLADTKKQLDEIKPRDNKKIASKPTLLNKNKVMVDKSDLADLEQRASFSDNYNQMHARARREADSLRDK
LTRTTWDYNDLERENERLQKLVGTLQGIVRNVDEFLHKKLGINLPDKWLERAGLKEPSKKAPESSQELEK
HKSDQLGGPHL

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(1-194)


  Protein structure


Source ID Structure
AlphaFold DB I6Q886


Host bacterium

ID   7861 GenBank   NC_019353
Plasmid name   pMBLR00 Incompatibility group   -
Plasmid size   3370 bp Coordinate of oriT [Strand]   1582..1606 [+]
Host baterium   Leuconostoc mesenteroides subsp. mesenteroides

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -