Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 107357
• Name: oriT_pLP2.5-11
• Organism: Lactiplantibacillus plantarum strain WP72/27
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_OP831909 (2486..2505 [-], 20 nt)
• oriT length: 20 nt
• IRs (inverted repeats): _
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 20 nt

>oriT_pLP2.5-11
GTTGTGTGTAAGTGCGCATT

oriT secondary structure

Predicted by RNAfold.

Relaxase

mobV_P2266_RS00010_pLP2.5-11

• ID: 4908
• GenBank: WP_280990906
• Name: mobV_P2266_RS00010_pLP2.5-11
• UniProt ID: _
• Length: 216 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 216 a.a.
• Molecular weight: 24804.96 Da
• Isoelectric Point: 7.0266

>WP_280990906.1 MobV family relaxase [Lactiplantibacillus plantarum]
MINGNDFSQMSQLAAHMQKFKIGNLGGLQRHDERTLQRHSNPDIDVSKSSDNFSVLPLERLDPKRSLHKQ
VQEIIADERVSNRAVRKDAVVLTEWVISSDSTFFEGLSRDETKQFFTDAYQWFANHFGADHIPYATVHMD
ETTPHMHMGVIPLTNGRLSAKAIFNREALRFIQADLPQKLNEKGWNIERGERGSKRKHFFEESVGISLFC
CQLADF

Protein domains

Predicted by InterproScan.

• Plasmid recombination enzyme (Mob_Pre) (13-198)

Protein structure

No available structure.

Host bacterium

• ID: 7794
• GenBank: NZ_OP831909
• Plasmid name: pLP2.5-11
• Incompatibility group: -
• Plasmid size: 2754 bp
• Coordinate of oriT [Strand]: 2486..2505 [-]
• Host baterium: Lactiplantibacillus plantarum strain WP72/27

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -