Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   107354
Name   oriT_pLA106 in_silico
Organism   Lactobacillus acidophilus
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NC_004985 (205..241 [+], 37 nt)
oriT length   37 nt
IRs (inverted repeats)      14..21, 28..35  (AAAGTATA..TATACTTT)
 1..7, 12..18  (ACTTTGT..ACAAAGT)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 37 nt

>oriT_pLA106
ACTTTGTGATAACAAAGTATACTGGATTATACTTTAC

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   4906 GenBank   WP_011117325
Name   mobV_HXF28_RS00010_pLA106 insolico UniProt ID   O32743
Length   411 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 411 a.a.        Molecular weight: 47494.52 Da        Isoelectric Point: 9.4586

>WP_011117325.1 MobV family relaxase [Lactobacillus acidophilus]
MSQLAAHMQKFKIGNLGGLQRHDERTLQRHSNPDIDVSKSSDNFSVLPLERLDPKRSLHKQVQEIIADER
VSNRAVRKDAVVLTEWVISSDSTFFEGLSRDETKQFFTDAYQWFANHFGADHIPYATVHMDETTPHMHMG
VIPLTNGRLSAKAIFNREALRFIQADLPQKLNEKGWNIERGERGSKRKHLSVERYKDVAESLKQGEPLFD
VSKLQHERVPIVNMFNFVKGKEATQNYILTPEDYQRLTERVQGFSDLGHAVKDVNELKTALSARESRIRQ
REKELDKREDAISKNENLIETYDYWYDQAYEQSDKVTQLQDQIKTLKAENKQWQQRYYKLVDAVHDMAKT
IGTLIADYPAWEQKLNEFGQRVIRGTRAFAKNTLNKVQAYGAAATTKTSATARTRTIMYGV

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(4-197)


  Protein structure


Source ID Structure
AlphaFold DB O32743


Host bacterium

ID   7791 GenBank   NC_004985
Plasmid name   pLA106 Incompatibility group   -
Plasmid size   2862 bp Coordinate of oriT [Strand]   205..241 [+]
Host baterium   Lactobacillus acidophilus

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -