Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 107351
• Name: oriT_pPLA4
• Organism: Lactiplantibacillus plantarum
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_AF304384 (7578..7605 [-], 28 nt)
• oriT length: 28 nt
• IRs (inverted repeats): 1..6, 10..15 (CTTTAC..GTAAAG)
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 28 nt

>oriT_pPLA4
CTTTACGAAGTAAAGTATAGTGGGTTAT

oriT secondary structure

Predicted by RNAfold.

Relaxase

mobV_HKJ98_RS00045_pPLA4

• ID: 4902
• GenBank: WP_032491773
• Name: mobV_HKJ98_RS00045_pPLA4
• UniProt ID: _
• Length: 361 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 361 a.a.
• Molecular weight: 42009.05 Da
• Isoelectric Point: 7.6905

>WP_032491773.1 MobV family relaxase [Lactiplantibacillus plantarum]
MSFAVARMTKLKADNLVGIGNHDQRKTTNHSNEDIDVSRSHLNYDLVAGRTDNFKTDIEAYINENKASKR
AVRKDAVLVNEWIITSDKDFFEQLDEAETRKYFETAKQYFADNYGDENIRYAVVHLDEKTPHMHMGIVPF
DNDKKLSAKRIFNREALQRIQEELPQYLKENGFDVQRGNKNKERKNLSVPEYKAMREELKKIETEKQETQ
AKLADTKKQLDEIKPRDTKKIASKPTLLNKNKVTVDKFDLADLEQRAVTSDAYNFEKIHLEVENHSLRND
LSEAKGRNYELRKENERLQKLVETLXGIIRNVDEFLHKKLGINLPDKWLERAGLKEPSKKAPESSQELDR
HKSDELGGPHL

Protein domains

Predicted by InterproScan.

• Plasmid recombination enzyme (Mob_Pre) (1-194)

Protein structure

No available structure.

Host bacterium

• ID: 7787
• GenBank: NZ_AF304384
• Plasmid name: pPLA4
• Incompatibility group: -
• Plasmid size: 8135 bp
• Coordinate of oriT [Strand]: 7578..7605 [-]
• Host baterium: Lactiplantibacillus plantarum

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -