Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   107350
Name   oriT_pGE2 in_silico
Organism   Komagataeibacter europaeus
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NC_024994 (3012..3032 [-], 21 nt)
oriT length   21 nt
IRs (inverted repeats)     _
Location of nic site      15..16
Conserved sequence flanking the
  nic site    		  GTGCGCCCTT
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 21 nt

>oriT_pGE2
GTTTGCATAAGTGCGCCCTTA

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   4901 GenBank   WP_031943925
Name   mobQ_HXC72_RS00040_pGE2 insolico UniProt ID   A0A089ZZ65
Length   441 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 441 a.a.        Molecular weight: 50089.89 Da        Isoelectric Point: 9.8970

>WP_031943925.1 MobQ family relaxase [Komagataeibacter europaeus]
MAIFHLSVKTVSRSTGRSAVAAAAYRTGDTLTNERDGCHHDYTRRSGVDGSFIMAPTGCDWALDRSRLWN
TAEQTEKRSNSVTAREYVLALPAELDATERSDLARAFAGALVERYGVAADVALHAPSREGDERNHHAHIL
TTTREVEPDGLGKKTRILDAAKTGGPEIESLRELWAMQCNEALERHNKPARVDHRSYERQGVEKMPTLHL
GPTSVTIERKHQAEAERKEEDYQPRTFKAQENRRRRGLNERVRELAQELAGVIQKVRAAKKAAASSLVRA
FGRSRRAEQEAEARYAEMLRQREAEQRRQAEEQQERAAEVRRKVLKRQEEQKQRIESRLAQLIREAPEKR
ADLFARFYPTDPLARAVDAKLYRMGLEDLEAEEKAVRTGLERYEAQERQRWSEGPGMRMRGRGRGRGGPS
RSRDRDTDPDPSGGGSSFEPF

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(17-220)


  Protein structure


Source ID Structure
AlphaFold DB A0A089ZZ65


Host bacterium

ID   7786 GenBank   NC_024994
Plasmid name   pGE2 Incompatibility group   -
Plasmid size   7187 bp Coordinate of oriT [Strand]   3012..3032 [-]
Host baterium   Komagataeibacter europaeus

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -