Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   107322
Name   oriT_pZ44 in_silico
Organism   Glaesserella parasuis strain Z44
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_OQ325043 (762..790 [-], 29 nt)
oriT length   29 nt
IRs (inverted repeats)      2..10, 14..22  (CAGTTTCTC..GAGAAACTG)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 29 nt

>oriT_pZ44
CCAGTTTCTCGCAGAGAAACTGATAAGTG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   4877 GenBank   WP_280985063
Name   MobA_MobL_P9A90_RS00015_pZ44 insolico UniProt ID   _
Length   450 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 450 a.a.        Molecular weight: 53579.87 Da        Isoelectric Point: 8.4078

>WP_280985063.1 MobA/MobL family protein [Glaesserella parasuis]
MAIYHLNVRYCSKSKGQSAPAKNEYINRNDKYSKRLDDLQFSGFGNMPKFAENNPQKFWQASDIYERANA
RVCTEIVFALPRELNLEQQQELVQSFINSTVNSERNKLPYSFAIHNDKANNNPHCHLIFSERQLDGIERS
EEQFFKRANSKNAELGGTKKTADFRDRDFIKAVRKTWSEQANFALEKHGHTARIDERSYQEQGIDKEPRA
RLDRVTWQELQRLEENAEFFAEVIERKQNQIEQEKVEITKNTPKNTLEPFSQKDDIKHEQIKKVAENRKE
SVSQAEFDRFLIENWLEPNQKFINACEKRAKMRSEWEQYGKDLERINSDYKALNEKKQGLFGLWETKEQK
QTKQELESEYYRIKALRKEKAEEHDTYNDKINQYEKDTIEPLRKQIEQMKADNPHLEQRNHQQLMAMKFK
GLEQWAKDKLQREQSQKRQISHSKDSDLSL

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(23-211)


  Protein structure



No available structure.




Host bacterium

ID   7758 GenBank   NZ_OQ325043
Plasmid name   pZ44 Incompatibility group   -
Plasmid size   6330 bp Coordinate of oriT [Strand]   762..790 [-]
Host baterium   Glaesserella parasuis strain Z44

Cargo genes

Drug resistance gene   floR
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -