Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 107314
• Name: oriT_pBR1.1
• Organism: Delftia lacustris strain BR1
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_OK324135 (3427..3458 [-], 32 nt)
• oriT length: 32 nt
• IRs (inverted repeats): 4..9, 13..18 (GCAAAC..GTTTGC)
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 32 nt

>oriT_pBR1.1
CACGCAAACGAAGTTTGCATAAGTGCGCCCTT

oriT secondary structure

Predicted by RNAfold.

Relaxase

mobQ_MMZ79_RS00020_pBR1.1

• ID: 4866
• GenBank: WP_218585626
• Name: mobQ_MMZ79_RS00020_pBR1.1
• UniProt ID: _
• Length: 543 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 543 a.a.
• Molecular weight: 61979.93 Da
• Isoelectric Point: 9.1758

>WP_218585626.1 MULTISPECIES: MobQ family relaxase [Pseudomonadota]
MAIYHLSVKTISRSAGRSATAAAAYRAGVEITDERTGEIHDYTRKGGVESAALILPDNAPEWARDRAQLW
NAAEQAEKRKNSTVAREFEIALPAELSPEQREKLAHDFARELVKRHGCAADVAIHAPGKEGDNRNHHAHI
LLTTRRLEPDGFGEKTRELDDQKTGKVLVTEWRERFATLQNERLREAGHSVQVDHRSLEAQGIEREATRH
LGPTATAIERRTGQPSHKRQQHNEDALERLQRARDAGELERQGKEADRSIIDLSGDLEAAKRERATQQER
QAREREQAEHQRIERMNSTELAHEIGRIRPPKALDLVERDRGVLQAEQERQALQNRHTEAGSASARARDQ
AQEWREAHKVQAWLHDKGIGHAAKLRELEEQREANRAEWQKLGPQIEQAGLQVQHLRSQAQQRISAEQAP
TLAKVAELEELRREKVRQEFEQQKRQQAEKKAEREREAVPKDFAAMAVKREMKAGGWSDRGEQWKAAPEG
LKKLIDGYNAAPNAARPAILERILSDGQRREQVRELLAEQRQQYRANDRGMER

Protein domains

Predicted by InterproScan.

• MobA/MobL family (MobA_MobL) (17-221)

Protein structure

No available structure.

Host bacterium

• ID: 7750
• GenBank: NZ_OK324135
• Plasmid name: pBR1.1
• Incompatibility group: -
• Plasmid size: 6543 bp
• Coordinate of oriT [Strand]: 3427..3458 [-]
• Host baterium: Delftia lacustris strain BR1

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -