Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   107219
Name   oriT_pEgFS4-1 in_silico
Organism   Enterococcus gallinarum strain FS4
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_MZ291452 (24830..24867 [+], 38 nt)
oriT length   38 nt
IRs (inverted repeats)      1..6, 10..15  (CTTTAC..GTAAAG)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 38 nt

>oriT_pEgFS4-1
CTTTACGAAGTAAAGTATAGTGGGTTATACTTTACATG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   4799 GenBank   WP_240016334
Name   Mob_Pre_MK934_RS00155_pEgFS4-1 insolico UniProt ID   _
Length   272 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 272 a.a.        Molecular weight: 31505.73 Da        Isoelectric Point: 9.5623

>WP_240016334.1 MULTISPECIES: plasmid recombination protein [Enterococcus]
MHLGIVPFNAEKRLSAKTLFNRQALQAVQDELPKYLNERGFELERGEKGSERKNLTVPEYKKAKDELKEM
TTTLEQRKSEVLALSNDKTPTINKESLDLKDETKTVKVPSGETIGIGKLRHEFTKNEERKTGNVIIPESK
LNALIQGYEDLYKSNEQLKKYAETDLPKRIDYVKGKYKEVVRDYNDLADRFNNNLEKIDSLEKENKSLKN
EIKGIYRGFNQFMENTLGATVGQAKKLMNNLVSEIKEFVKGGEFEKIHRNETRTRDRDELSR

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(1-62)


  Protein structure



No available structure.




Host bacterium

ID   7655 GenBank   NZ_MZ291452
Plasmid name   pEgFS4-1 Incompatibility group   -
Plasmid size   34679 bp Coordinate of oriT [Strand]   24830..24867 [+]
Host baterium   Enterococcus gallinarum strain FS4

Cargo genes

Drug resistance gene   erm(B), cfr, optrA, aph(2'')-Ic, aadD, ant(9)-Ia, lnu(A)
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -