Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 107211 |
| Name | oriT_pSCBC1  |
| Organism | Enterococcus faecium strain SCBC1 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP038169 (41039..41076 [+], 38 nt) |
| oriT length | 38 nt |
| IRs (inverted repeats) | 14..22, 29..37 (TAAAGTATA..TATACTTTA) 2..8, 13..19 (ACTTTAT..ATAAAGT) |
| Location of nic site | 27..28 |
| Conserved sequence flanking the nic site |
GTGTGTTATA |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 38 nt
>oriT_pSCBC1
CACTTTATGAATATAAAGTATAGTGTGTTATACTTTAC
CACTTTATGAATATAAAGTATAGTGTGTTATACTTTAC
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
T4CP
| ID | 4961 | GenBank | WP_159373489 |
| Name | t4cp2_E3T36_RS00110_pSCBC1 |
UniProt ID | _ |
| Length | 508 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
T4CP protein sequence
Download Length: 508 a.a. Molecular weight: 56880.09 Da Isoelectric Point: 4.6922
>WP_159373489.1 MULTISPECIES: VirD4-like conjugal transfer protein, CD1115 family [Enterococcus]
MNGTILGMVDKQIIYQNNSTKPNRNVFVVGGPGSYKTQSVVITNLFNETQNSIVVTDPKGELYEKTAGVK
VAQGYQVHVVNFANMIHSDRYNPFDYIDRDIQAENVATKIVQSENKEGKKDVWFSTQRQLLKALILFVMN
HREPKQRNLAGVTNVLQKFDVEPGEDETDSPLDSLFLDLDMSDPARRAYELGFKKAKGEMKASIIESLLA
TVSKFVDAEVADFTGFSDFDLKDIGSTKTVLYVIIPVMDDTYESFINLFFSQLFDELYKLASDHGAKLPV
SVDFILDEFVNLGKFPKYEEFLATCRGYGIGVTTICQTLTQLQALYGKEKAESILGNHAVKICLNAANDV
TAKYFSDLLGKSTVKVETGSESTSRSKETSTSKSDSYSYTSRSLMTSDEIMRMPDTQSLLIFSNQRPIKA
TKAFQFKLFPGADHLVELKQNDYTSEPTGSQLTKFNEANEKWEAELAKAKATKAKNDVKPEEEEDMQDEM
DLAVAKQQASSENEDVDF
MNGTILGMVDKQIIYQNNSTKPNRNVFVVGGPGSYKTQSVVITNLFNETQNSIVVTDPKGELYEKTAGVK
VAQGYQVHVVNFANMIHSDRYNPFDYIDRDIQAENVATKIVQSENKEGKKDVWFSTQRQLLKALILFVMN
HREPKQRNLAGVTNVLQKFDVEPGEDETDSPLDSLFLDLDMSDPARRAYELGFKKAKGEMKASIIESLLA
TVSKFVDAEVADFTGFSDFDLKDIGSTKTVLYVIIPVMDDTYESFINLFFSQLFDELYKLASDHGAKLPV
SVDFILDEFVNLGKFPKYEEFLATCRGYGIGVTTICQTLTQLQALYGKEKAESILGNHAVKICLNAANDV
TAKYFSDLLGKSTVKVETGSESTSRSKETSTSKSDSYSYTSRSLMTSDEIMRMPDTQSLLIFSNQRPIKA
TKAFQFKLFPGADHLVELKQNDYTSEPTGSQLTKFNEANEKWEAELAKAKATKAKNDVKPEEEEDMQDEM
DLAVAKQQASSENEDVDF
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 7647 | GenBank | NZ_CP038169 |
| Plasmid name | pSCBC1 | Incompatibility group | - |
| Plasmid size | 41082 bp | Coordinate of oriT [Strand] | 41039..41076 [+] |
| Host baterium | Enterococcus faecium strain SCBC1 |
Cargo genes
| Drug resistance gene | fexB, poxtA, tet(M), tet(L) |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |