Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   107029
Name   oriT_pHP1 in_silico
Organism   Aeromonas caviae isolate HP1
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_KU644673 (2210..2245 [-], 36 nt)
oriT length   36 nt
IRs (inverted repeats)      3..9, 13..19  (GTTTCTC..GAGAAAC)
Location of nic site      30..31
Conserved sequence flanking the
  nic site    		  GTGCGCCCTC
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 36 nt

>oriT_pHP1
CAGTTTCTCGCAGAGAAACCGGTAAGTGCGCCCTCC

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   4639 GenBank   WP_172688246
Name   MobA_MobL_HTH13_RS00050_pHP1 insolico UniProt ID   _
Length   705 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 705 a.a.        Molecular weight: 77910.75 Da        Isoelectric Point: 7.1945

>WP_172688246.1 MULTISPECIES: DNA-primase RepB domain-containing protein [Gammaproteobacteria]
MAIFHLAAKTGSRGGGQSAKAKADYIQREGKYARDKDEVLHTQSGNMPSWAAGAAEVGNYWDAADLYERA
NGRLFKEVEFALPIELTLDQQRVLVDDFAKYLTEVERLPYTLAIHKGGGENPHCHLMMSERKNDGVERKK
DQWFSRYNPKNPGQGGAQKTESLKPKAWLEKTRAAWADHANRALEMAGHEARIDHRTLEAQGIERLPTIH
LGPNVVEMEGRGIRTGRADTALSIETANTEIIDLQAYRESIDHERDRQSEAGQRDRRAGGADRAAGAELG
DSRRQGRDGDRGDSKCQHKAGWRVGDPAGQSRDGVGRHSQGHEGRSRGTGQGSREGRGRSESVGMEDFRS
HLDGFSAVYASAADRIVALADPGTQDDKGGGNVATTQAQVKGDRTSQAIARQLKAMGCDLYDIGIRDSAT
GKMMNREWTLQEVVENAAWLKRMNAQGNDIYIRPAESARHGLVLVDDLSSFDLDAMKEEGREPAAVIETS
PKNYQAWVKVAANAPAEHRGAIARRLAREYDADPASADSHHYGRLAGFTNQKPKHTTKTGYQPWVLCRAS
SGQAATTGPQMVQEAGQELESKERQQEQARRLEGIETAQPRRYHRTALDEYRSEMAGLVKRFGDDLSKCD
YIAAMKLAMKGIDPDEIAKAMAEASPGLMDRKAGHEADYIERTIKKVMALPEVQKIRAELEQTQKTKGEY
PTLEM

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(21-220)

RepB DNA-primase from phage plasmid (RepB_primase)

(419-592)


  Protein structure



No available structure.




Host bacterium

ID   7465 GenBank   NZ_KU644673
Plasmid name   pHP1 Incompatibility group   IncQ1
Plasmid size   6410 bp Coordinate of oriT [Strand]   2210..2245 [-]
Host baterium   Aeromonas caviae isolate HP1

Cargo genes

Drug resistance gene   qnrS2
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -