Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   107023
Name   oriT_pAerVIII in_silico
Organism   Aeromonas sp. strain RO9
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_MK962688 (1872..1900 [-], 29 nt)
oriT length   29 nt
IRs (inverted repeats)      2..9, 13..20  (GACTTTAC..GTAAAGTC)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 29 nt

>oriT_pAerVIII
CGACTTTACGAAGTAAAGTCTAGTGAGTA

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   4633 GenBank   WP_202979138
Name   mobV_JSX32_RS00010_pAerVIII insolico UniProt ID   _
Length   336 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 336 a.a.        Molecular weight: 37517.96 Da        Isoelectric Point: 10.4533

>WP_202979138.1 MobV family relaxase [Aeromonas sp.]
MAAFAIMRCKKLSGMGSVAASLKHCFRERDTPNADPERLRHNMHMAARSTDEAMGKLREKLPEKRRKDAV
LAIEYVLSASPEWWINADSGRKADFYQSSMDWLAEKFGRENILVSSIHLDEKTPHMSAFVVPITKDGRLS
AKEFIGNRTKMSNDQSSYAEAVKHLGLVRGIEGSKATHKRIKAHYNALGQQIPVPPEIREEDLKPQSEQG
PGLLGKIGLRPMIETPLGVAERLNAKFAKAFKVVAEKASESDSQRGAAVRARMALADTQKQLQALQEPFK
GLSKDQVAEVLKQAVAMQQDNQRRQQEQDLARKLEAEIRRKLGPQQGSNPSRGFGR

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(1-185)


  Protein structure



No available structure.




Host bacterium

ID   7459 GenBank   NZ_MK962688
Plasmid name   pAerVIII Incompatibility group   -
Plasmid size   2811 bp Coordinate of oriT [Strand]   1872..1900 [-]
Host baterium   Aeromonas sp. strain RO9

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -