Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 107013 |
| Name | oriT_pJIR3844  |
| Organism | Clostridium perfringens |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NC_019257 (14797..14944 [+], 148 nt) |
| oriT length | 148 nt |
| IRs (inverted repeats) | 133..138, 142..147 (ATACAT..ATGTAT) 117..123, 137..143 (ATTATAT..ATATAAT) 119..125, 129..135 (TATATAT..ATATATA) 121..127, 129..135 (TATATAT..ATATATA) 123..128, 130..135 (TATATA..TATATA) 112..118, 122..128 (TATATAT..ATATATA) 112..118, 120..126 (TATATAT..ATATATA) 112..117, 119..124 (TATATA..TATATA) 20..25, 28..33 (TTTAAA..TTTAAA) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 148 nt
>oriT_pJIR3844
AAGGAACTTTACAGGGAACTTTAAAAATTTAAATTGATATAGAAGTTCCCTGTATTAATATTAGTATTTTAAAGAGATATATCATTATTAGTTCCTTATCGTATTATAGAGTATATATTATATATATAATATATACATATAATGTATT
AAGGAACTTTACAGGGAACTTTAAAAATTTAAATTGATATAGAAGTTCCCTGTATTAATATTAGTATTTTAAAGAGATATATCATTATTAGTTCCTTATCGTATTATAGAGTATATATTATATATATAATATATACATATAATGTATT
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
T4CP
| ID | 4721 | GenBank | WP_015060529 |
| Name | tcpA_HS901_RS00125_pJIR3844 |
UniProt ID | _ |
| Length | 527 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
T4CP protein sequence
Download Length: 527 a.a. Molecular weight: 60199.38 Da Isoelectric Point: 6.1216
>WP_015060529.1 FtsK/SpoIIIE domain-containing protein [Clostridium perfringens]
MSSDWEKKVNQEVENGLNAIINEIANVLKIFFFRVGLGFKKSWKNKKLFIGFFLSFLIPIAARIKSDYFL
VDTKFYFKIIYFSTFIAPLFYMVIVSFVKNKEDKRNAEYRLAFEQLNFVGADSKTPILKSFIEDKGTRID
EITFESMIPIETWKSYIPQLQTSLNISIISIEQGASKRIVIIKSMAGDAKIPKYLPWDDKYIEEQEGVVV
VGQTFSGNIKIDLNKSPHILSAGETGSGKSVILRCILWQLLKQGAIAYMVDFKGGVEFGLEYEKVGQVIT
EVDAAEKLFKYLVDENAKRLKLLRESGSKNIGEYNKKFEGEELKRIIVVIDELAELMDKTGVDDETRAKL
VRIEGYTSTLARLSRATGINLCIGVQRPDAKVITGQIKNNVPVRICGRFADSKASEIVLSNTKAKDLPEV
KGRFLFKLGADTVQFQAFYFDDDKHFIPNKILKLRKDEIEDKKVGLDLNKEKLIDNDLMNSVNEKFEIKE
VKSMDSNIENEDDSKFENFEEQNKTENLKSTINDDYE
MSSDWEKKVNQEVENGLNAIINEIANVLKIFFFRVGLGFKKSWKNKKLFIGFFLSFLIPIAARIKSDYFL
VDTKFYFKIIYFSTFIAPLFYMVIVSFVKNKEDKRNAEYRLAFEQLNFVGADSKTPILKSFIEDKGTRID
EITFESMIPIETWKSYIPQLQTSLNISIISIEQGASKRIVIIKSMAGDAKIPKYLPWDDKYIEEQEGVVV
VGQTFSGNIKIDLNKSPHILSAGETGSGKSVILRCILWQLLKQGAIAYMVDFKGGVEFGLEYEKVGQVIT
EVDAAEKLFKYLVDENAKRLKLLRESGSKNIGEYNKKFEGEELKRIIVVIDELAELMDKTGVDDETRAKL
VRIEGYTSTLARLSRATGINLCIGVQRPDAKVITGQIKNNVPVRICGRFADSKASEIVLSNTKAKDLPEV
KGRFLFKLGADTVQFQAFYFDDDKHFIPNKILKLRKDEIEDKKVGLDLNKEKLIDNDLMNSVNEKFEIKE
VKSMDSNIENEDDSKFENFEEQNKTENLKSTINDDYE
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 7449 | GenBank | NC_019257 |
| Plasmid name | pJIR3844 | Incompatibility group | - |
| Plasmid size | 70192 bp | Coordinate of oriT [Strand] | 14797..14944 [+] |
| Host baterium | Clostridium perfringens |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |