Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 106957 |
| Name | oriT_pSI102-4  |
| Organism | Salmonella enterica subsp. enterica serovar Indiana strain SI102 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP050775 (577..751 [+], 175 nt) |
| oriT length | 175 nt |
| IRs (inverted repeats) | 101..106, 120..125 (ACAATC..GATTGT) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 175 nt
>oriT_pSI102-4
GTGACTCCTTGCGCGGTGAAAAATCGCATTTTAGCTCGTCACTGGTAGTTTAAAAACTGAGCTGGCATAATGCACGGCATATCACGAAGTGCGCACTTATACAATCTTCACTTCGTTTCGATTGTGTGCGCCCTGCGGGGCTGAAAGAAAACGGCAAAAAGGCATTACGGCAGAA
GTGACTCCTTGCGCGGTGAAAAATCGCATTTTAGCTCGTCACTGGTAGTTTAAAAACTGAGCTGGCATAATGCACGGCATATCACGAAGTGCGCACTTATACAATCTTCACTTCGTTTCGATTGTGTGCGCCCTGCGGGGCTGAAAGAAAACGGCAAAAAGGCATTACGGCAGAA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 4596 | GenBank | WP_167810811 |
| Name | mobQ_HEC79_RS24115_pSI102-4 |
UniProt ID | _ |
| Length | 739 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 739 a.a. Molecular weight: 84227.36 Da Isoelectric Point: 8.4422
>WP_167810811.1 MobQ family relaxase [Salmonella enterica]
MAIYHLSMKIISRKNGYSAVASAAYRSGSVIPDDRTGLIHDYTRKRGVDDAVILTPANAPSWCGDRSVLW
NAVEKAEQRRNSQLAREIELAIPREISREAAREAVLAFVRENFVSRGMIADVAFHHMDRTNPHAHIMLTT
RAVGETGFAGKVRDWNDRALAETWRASWADHANRALANAGYQEEIDHRSYERQGLEKAPGLHLGKAACAM
EKRGMETERGEQNRLINSLNLEIQVSRTRLAVIQVQENVRKRELSDAARRAAEALNLTIPAANASADTLR
EFIATLPQECGNAWEMTPEFVAMNGKANDIKREGNALVKERDILEKEMTGLRKARPVASILSELPLMTWA
EPEYRKRQLRFWKLEKQIESLLRTYRAVKERDIPARRQAFETQWNTWISPGMAELKEKLSAREAERRREE
AEAEARRKEQEYDARLKHHDNHRLSRETALAGVITGLGRAREPGTGRITRYMMLSNRAGEFTVWGDELAH
YPQSVHDPVNVYLSPGGAVMVSDIREGMPESHETMARPERVRMYSGATVRHVLEQMRQGWPSYGFPALPH
HWPDNFYFSDDRRPVASPLPSAHRVDVTAYAAPEQLMPVVFSTERNSRTLNLLLCKGPEEVLVGFVRQED
GLRPVLALPSPDYSHLIVSTITENGVCLAGYGEAINHDADTPYPPEPKLMQFRLKGCQDTLFAAINKPEE
MPDYLFRQLGFNQTWHEWKRDEQHRQQQRRPGHYRGMSM
MAIYHLSMKIISRKNGYSAVASAAYRSGSVIPDDRTGLIHDYTRKRGVDDAVILTPANAPSWCGDRSVLW
NAVEKAEQRRNSQLAREIELAIPREISREAAREAVLAFVRENFVSRGMIADVAFHHMDRTNPHAHIMLTT
RAVGETGFAGKVRDWNDRALAETWRASWADHANRALANAGYQEEIDHRSYERQGLEKAPGLHLGKAACAM
EKRGMETERGEQNRLINSLNLEIQVSRTRLAVIQVQENVRKRELSDAARRAAEALNLTIPAANASADTLR
EFIATLPQECGNAWEMTPEFVAMNGKANDIKREGNALVKERDILEKEMTGLRKARPVASILSELPLMTWA
EPEYRKRQLRFWKLEKQIESLLRTYRAVKERDIPARRQAFETQWNTWISPGMAELKEKLSAREAERRREE
AEAEARRKEQEYDARLKHHDNHRLSRETALAGVITGLGRAREPGTGRITRYMMLSNRAGEFTVWGDELAH
YPQSVHDPVNVYLSPGGAVMVSDIREGMPESHETMARPERVRMYSGATVRHVLEQMRQGWPSYGFPALPH
HWPDNFYFSDDRRPVASPLPSAHRVDVTAYAAPEQLMPVVFSTERNSRTLNLLLCKGPEEVLVGFVRQED
GLRPVLALPSPDYSHLIVSTITENGVCLAGYGEAINHDADTPYPPEPKLMQFRLKGCQDTLFAAINKPEE
MPDYLFRQLGFNQTWHEWKRDEQHRQQQRRPGHYRGMSM
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 7394 | GenBank | NZ_CP050775 |
| Plasmid name | pSI102-4 | Incompatibility group | Col156 |
| Plasmid size | 4234 bp | Coordinate of oriT [Strand] | 577..751 [+] |
| Host baterium | Salmonella enterica subsp. enterica serovar Indiana strain SI102 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |