Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   106921
Name   oriT_paIh7 in_silico
Organism   Arsenophonus nasoniae strain aIh
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP123497 (623..664 [-], 42 nt)
oriT length   42 nt
IRs (inverted repeats)      7..13, 25..31  (TGTTTCT..AGAAACA)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 42 nt

>oriT_paIh7
GCGCACTGTTTCTGAGCGTAGCGAAGAAACATATAAGTGCGC

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   4576 GenBank   WP_280628507
Name   MobA_MobL_QE207_RS01925_paIh7 insolico UniProt ID   _
Length   324 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 324 a.a.        Molecular weight: 37499.80 Da        Isoelectric Point: 9.7835

>WP_280628507.1 MobA/MobL family protein [Arsenophonus nasoniae]
MATYHFSVKFGSKGKALGHANYISREAEYQHRGGLEHIEHGNMPTWAQENPAHFWQAADTFERANGSGYR
EFEIALPRELTSAQRIELVRDFIREELGDKHAYSVALHNAAGSIDDGEQPHAHIMMSQRVNDGIERSPEQ
YFKRYNAKFPERGGARKDSGHHLTPTEQREELKGLRERWEKKHNEHMQRHGQQHHLIDSRSHKTRGINRT
PEHHFGFKAAGRMTAEQKLAIRDLRALSNSDIRYCELKKSDFSQALAKDYYQSASQSFKAEYGQGAEMLK
TFKLDLTKNFQQEHNKKLQFNYQSGKAEVKPLRPERGLSRGWSM

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(22-220)


  Protein structure



No available structure.




Host bacterium

ID   7358 GenBank   NZ_CP123497
Plasmid name   paIh7 Incompatibility group   -
Plasmid size   3940 bp Coordinate of oriT [Strand]   623..664 [-]
Host baterium   Arsenophonus nasoniae strain aIh

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -