Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 106912
• Name: oriT_A44|unnamed1
• Organism: Ochrobactrum quorumnocens strain A44
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CP022605 (1019619..1019647 [+], 29 nt)
• oriT length: 29 nt
• IRs (inverted repeats): 14..19, 24..29 (CGTCGC..GCGACG)
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 29 nt

>oriT_A44|unnamed1
AGGGCGCAATATACGTCGCTCGCGCGACG

oriT secondary structure

Predicted by RNAfold.

Relaxase

traA_CES85_RS26950_A44|unnamed1

• ID: 4569
• GenBank: WP_095445254
• Name: traA_CES85_RS26950_A44|unnamed1
• UniProt ID: _
• Length: 1545 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 1545 a.a.
• Molecular weight: 171262.50 Da
• Isoelectric Point: 10.1432

>WP_095445254.1 Ti-type conjugative transfer relaxase TraA [Ochrobactrum quorumnocens]
MAIMFIRAQVISRSAGRSVVSAAAYRHRARMLDEQAGTSFSYRGGASELKHEELALPDQVPAWLRSAIDG
RSVAAASEALWNAVDAFETRADAQLARELIIALPEELTRGENIALVQEFVRDNLTSKGMIADWVYHDKDG
NPHIHLMTALRPLTGEGFGGKNVPVLGGDGEPLRVITPDRPNGKIVYKLWAGDKETMKAWKIAWAQTANR
HLTLAGHDIRLDGRSYAEQGLDGIAQKHLGPKKAALARKGIEMYFAPAALAHRQEMADRLLADPGLLLKQ
LGNERSTFDEKDMARALHRYVDDPSDFANIRARLMASDNLVLLKAQQVDWQTGKVTEPAIFTTREILRIE
YDMARSAEVLSQRKGFGIADAKIARAVRSFETADPNKSLVLDREQVEAVRHIAGDSAIAAVVGLAGAGKS
TLLAAARVAWEHEHRRVFGAALAGKAAEGLEESSGIKSRTLAACELAWENGRDLLKQGDVLIVDEAGMVS
SQQMARVLKAAENAGAKVVLVGDAMQLQPIQAGAAFRAIAERIGFAELAGVRRQRETWARDASRMLAQGK
VGEGLDAYAQHGHIFEAERRSEAIERIVTDWSKARQQAIATCVAARNGGRLRGDEMLVLAHTNEDVKRLN
SSLRTVMNREGALTEVREFRTERGVREFGSGDRIIFLENARFVEKRATRPGPHYVKNGMLGTVVSTGSKR
GGPLLSIRLDNGSDVVLSEDSYRNIDHGYAATIHKSQGSTVDRTFVLASGMMDQHLTYVSMTRHRDRADL
YAAREDFEPKPEWGGKSRVDHRMGVTGELVETGVAKFRPQDEETEQSPYADVKTDEGTIHRLWGVSLPRA
LSEGGVLKGDTVLLKKDGVEIVKVKIPVIDKETGRKSFEEREVERNVWTAKQLETAIIRSERIERESHRP
ELFGQLVERLGRSGAKTTTLDFESEAGYQAHVRDFARRRGIDTLAGAVAGIKQRVEQKLAWLDDKRGQVA
KLWERASVAFDIVIERERSVSYNDDRFENLAARSPETSERGGGGPYLIAPTTRFARSLEEDARRAQLHSD
RWREREAILRPVLEKIYRDPDRALARLNALASNRHTEPRRLAEDLATTPQRLGRLLGSDRLADGRAARGE
HKQARAALSELSPLARAHATEFRRQAEGFGLREKQRRAHMALSIPALSKPAMARLLEIEAVRKSGGPDAY
KTAFAYAVEDRLLVQQVKAVNEALTARFGYSTFTDKVDGVVQRNRLERMPDGLTPERREKLTHLFGAVRR
FADEQHIAERKDHRKLVAAASVEPGKESTLRLPMLAAVTEFKTRAEDQAQTRALAANHYRHNRAALAQTA
SSIWRDPAGAASTIEGLILKGISGERIAAAVANHPEAYGALRGSERIIDRLLAGGRERKNAVKAVMEAES
RIRSLAASYVTALDSELKVIVEERRRMGIAIPGMSPAAEDALRELTAGIKTKETKLDIAARSLDARTWQE
FTRVSRALDLRFGRDAILRGEKSVVNVVPPQQRQAFEAMQKRLKTLQQVVRMGSTEQIVAERQRRVVERG
QSIQH

Protein domains

Predicted by InterproScan.

• AAA domain (AAA_30) (391-577)

• MobA/MobL family (MobA_MobL) (17-249)

• BID domain of Bartonella effector protein (Bep) (Bep_C_terminal) (1315-1405)

Protein structure

No available structure.

Host bacterium

• ID: 7349
• GenBank: NZ_CP022605
• Plasmid name: A44|unnamed1
• Incompatibility group: -
• Plasmid size: 1032012 bp
• Coordinate of oriT [Strand]: 1019619..1019647 [+]
• Host baterium: Ochrobactrum quorumnocens strain A44

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: fixA, fixB
• Anti-CRISPR: -