Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 106766 |
| Name | oriT_XJ5|unnamed2  |
| Organism | Bacillus amyloliquefaciens strain XJ5 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP071972 (6..296 [+], 291 nt) |
| oriT length | 291 nt |
| IRs (inverted repeats) | 220..225, 231..236 (AAAAAG..CTTTTT) 118..123, 128..133 (CACCAT..ATGGTG) 101..108, 110..117 (AAACCGCA..TGCGGTTT) 35..40, 47..52 (TTTATG..CATAAA) |
| Location of nic site | 41..42 |
| Conserved sequence flanking the nic site |
TATGGTTACA |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 291 nt
>oriT_XJ5|unnamed2
AAGATTTATGTGCTTTTTGATTTTAATCACCTAATTTATGGTTACACATAAACATTTTGTTTATGTGCATTGGGCAATAAATCTGGTACCACGACAAAACAAACCGCACTGCGGTTTCACCATGGGAATGGTGCCAGTTTCCCCTTATGCTCTTTCCTTTTCCACCCCTCCTTCCTTCGGAATCGGGGGCCGGTTTTTTGCTGCCGCAAAAAACCTTGGAAAAAGAAACACTTTTTTTGAACAGATCATTGCAAAATAAAGTGCCAAAACAGATTAAAAGGAGCGTTCACA
AAGATTTATGTGCTTTTTGATTTTAATCACCTAATTTATGGTTACACATAAACATTTTGTTTATGTGCATTGGGCAATAAATCTGGTACCACGACAAAACAAACCGCACTGCGGTTTCACCATGGGAATGGTGCCAGTTTCCCCTTATGCTCTTTCCTTTTCCACCCCTCCTTCCTTCGGAATCGGGGGCCGGTTTTTTGCTGCCGCAAAAAACCTTGGAAAAAGAAACACTTTTTTTGAACAGATCATTGCAAAATAAAGTGCCAAAACAGATTAAAAGGAGCGTTCACA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 4459 | GenBank | WP_208557299 |
| Name | mobP2_J4048_RS21755_XJ5|unnamed2 |
UniProt ID | _ |
| Length | 410 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 410 a.a. Molecular weight: 48348.01 Da Isoelectric Point: 9.8707
>WP_208557299.1 MULTISPECIES: MobP2 family relaxase [Bacillus]
MDAPGVVLVSKYVSGKSTKFSKYVNYINRDEAVRTEKFQTYNVNKLDGYNQYMGNPEKSSGIFTQFKDTL
SPQEKNQLKEIFRQAQENDSVMWQDVISFDNKWLEEHGIYKPDTGWINEGAIQNSIRKGMKVLLKEEQLE
QSGVWSAAIHYNTDNIHVHIALVEPNPTKEYGVFTNKKTGEVYQARRGNRKLKTLDKMKSKVANTLLDRD
KELAKISQLIHDRIAPKGVKFQPRLDTYMSKMYNHIYANLPEDMRLWRYNNNALNFIRPEIDSVITMYIQ
KYHPEDFKELDQSLKEEMEFRKSVYGDGPIQVERYKEYRENKHKELYAKLGNSMLKEMVEIRKRESQTKQ
FVRTGTYAPGSASQKQWDAKGKLIKRSDINKIKHALDKDYQSMKNMRKYQQMQYEMEQSR
MDAPGVVLVSKYVSGKSTKFSKYVNYINRDEAVRTEKFQTYNVNKLDGYNQYMGNPEKSSGIFTQFKDTL
SPQEKNQLKEIFRQAQENDSVMWQDVISFDNKWLEEHGIYKPDTGWINEGAIQNSIRKGMKVLLKEEQLE
QSGVWSAAIHYNTDNIHVHIALVEPNPTKEYGVFTNKKTGEVYQARRGNRKLKTLDKMKSKVANTLLDRD
KELAKISQLIHDRIAPKGVKFQPRLDTYMSKMYNHIYANLPEDMRLWRYNNNALNFIRPEIDSVITMYIQ
KYHPEDFKELDQSLKEEMEFRKSVYGDGPIQVERYKEYRENKHKELYAKLGNSMLKEMVEIRKRESQTKQ
FVRTGTYAPGSASQKQWDAKGKLIKRSDINKIKHALDKDYQSMKNMRKYQQMQYEMEQSR
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
T4CP
| ID | 4506 | GenBank | WP_073982219 |
| Name | t4cp2_J4048_RS22095_XJ5|unnamed2 |
UniProt ID | _ |
| Length | 786 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
T4CP protein sequence
Download Length: 786 a.a. Molecular weight: 90647.01 Da Isoelectric Point: 4.8228
>WP_073982219.1 MULTISPECIES: VirD4-like conjugal transfer protein, CD1115 family [Bacillus]
MHKEFKQWKKIFADKYFLIAFTLFCYAAVTCAANFLLHLFKQIPLMLSSFKTFDQSKLSSPFDSYSWKWF
FEFEWDMGIIYGVLYIIASIFIVRQVYRFRIAFRDINKQTKGTARWTTIKEIQETYKAIKDDDIEYEGSA
GMPIVHFNDHLYVDTNSTHTLVVASTQSGKTETYSYPYLDVIMRAKKKDSVVITDIKGDMLKNTHSEFEK
HGYEVMCFNLLNPYWGMAYNPLELVKQAYMKGDFSKAQMLCNTLSYSLFHNDKSHADPMWENASIALVNA
LILAVCDLCIKNGQPENITMYTLTVMLNELGSNPDEDGYTRLDHFFGNLPPSHPAKLQYGTIQFSQGITR
SGIYTGTMAKLKNYTYDTIARMTAQNDLNIEDLAYGEKPVALFIVYPDWDDSNYTIISTFLSQVNAVLSE
KATLSKESTLPRKVRYLFEEVANIPPIEGLNRALAVGLSRGMLYTLVIQNVSQLRDVYGDDMATAIMGNL
GNQIYIMSDEWEDAEKFSEKLGVTTIISADRQGGLMDVDKSYSEREEERPLMLPDELRRLKKGEWVVLRT
KKRENLKRKRVVPYPIFASLDNETHMLHRYEYLMHRFNNEIALGDLGFHGNHETLDLESLLIEFEFNEPV
EQKNKVKGKKRSDKKDADPEVPDYNEIPPPEEPIGIADESSEAMGSLFELVPSDNTNEEEFYEGPCLIDS
SRNEVLEVSEEDAIMNSLEEVYETSTPISDAIKADQYVYIKFFAQKALTEDEYNYFESLTTIEQLRAFFR
APEKHELYEKIKKHIE
MHKEFKQWKKIFADKYFLIAFTLFCYAAVTCAANFLLHLFKQIPLMLSSFKTFDQSKLSSPFDSYSWKWF
FEFEWDMGIIYGVLYIIASIFIVRQVYRFRIAFRDINKQTKGTARWTTIKEIQETYKAIKDDDIEYEGSA
GMPIVHFNDHLYVDTNSTHTLVVASTQSGKTETYSYPYLDVIMRAKKKDSVVITDIKGDMLKNTHSEFEK
HGYEVMCFNLLNPYWGMAYNPLELVKQAYMKGDFSKAQMLCNTLSYSLFHNDKSHADPMWENASIALVNA
LILAVCDLCIKNGQPENITMYTLTVMLNELGSNPDEDGYTRLDHFFGNLPPSHPAKLQYGTIQFSQGITR
SGIYTGTMAKLKNYTYDTIARMTAQNDLNIEDLAYGEKPVALFIVYPDWDDSNYTIISTFLSQVNAVLSE
KATLSKESTLPRKVRYLFEEVANIPPIEGLNRALAVGLSRGMLYTLVIQNVSQLRDVYGDDMATAIMGNL
GNQIYIMSDEWEDAEKFSEKLGVTTIISADRQGGLMDVDKSYSEREEERPLMLPDELRRLKKGEWVVLRT
KKRENLKRKRVVPYPIFASLDNETHMLHRYEYLMHRFNNEIALGDLGFHGNHETLDLESLLIEFEFNEPV
EQKNKVKGKKRSDKKDADPEVPDYNEIPPPEEPIGIADESSEAMGSLFELVPSDNTNEEEFYEGPCLIDS
SRNEVLEVSEEDAIMNSLEEVYETSTPISDAIKADQYVYIKFFAQKALTEDEYNYFESLTTIEQLRAFFR
APEKHELYEKIKKHIE
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 7203 | GenBank | NZ_CP071972 |
| Plasmid name | XJ5|unnamed2 | Incompatibility group | - |
| Plasmid size | 63621 bp | Coordinate of oriT [Strand] | 6..296 [+] |
| Host baterium | Bacillus amyloliquefaciens strain XJ5 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |