Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 106715 |
| Name | oriT_pAtCFBP4996c  |
| Organism | Agrobacterium leguminum strain CFBP4996 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP120215 (6104..6137 [-], 34 nt) |
| oriT length | 34 nt |
| IRs (inverted repeats) | 4..10, 14..20 (ACATTGC..GCAATGT) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 34 nt
>oriT_pAtCFBP4996c
TGCACATTGCGGAGCAATGTATAAGCGCGCCCTT
TGCACATTGCGGAGCAATGTATAAGCGCGCCCTT
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 4438 | GenBank | WP_170988533 |
| Name | mobQ_CFBP4996_RS26620_pAtCFBP4996c |
UniProt ID | _ |
| Length | 412 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 412 a.a. Molecular weight: 47028.03 Da Isoelectric Point: 6.5941
>WP_170988533.1 MobQ family relaxase [Agrobacterium leguminum]
MAIYRFKADPICRSDGRSAVASAAYRAGNDLYDEKYGKSHDYSRKRGVVHSEIMAPENTPDWMKDRGKLW
NAVEAVEKRKDAQLARELQITLPRELDKDEQREVIRSFIRDEFVQHGMIADIAIHNPKASDGLDQPHAHV
MLTMRELTGEGFGKKNRDWNRKDHLERWREKWQDYANDALERAGHSARIDHRSLEAQRQAANDRGDEERA
AELDREPQPKLGSAAAALERRGIATERGDELRAVVARNAERQSLRDQLREIGQRIGDTLSQVRDGLRNTA
DTIRDRLSQAAAVVMDRGRGSVERQAEGPKAEIAGERTTDSIRERLSRAAASIKERDDMQEKDTGSTAER
LSQRLEKDDSSDRGGADRPRENSTEDRIAERLRDHLGGKEMDKDMEEHVRRIEVDLSRGIER
MAIYRFKADPICRSDGRSAVASAAYRAGNDLYDEKYGKSHDYSRKRGVVHSEIMAPENTPDWMKDRGKLW
NAVEAVEKRKDAQLARELQITLPRELDKDEQREVIRSFIRDEFVQHGMIADIAIHNPKASDGLDQPHAHV
MLTMRELTGEGFGKKNRDWNRKDHLERWREKWQDYANDALERAGHSARIDHRSLEAQRQAANDRGDEERA
AELDREPQPKLGSAAAALERRGIATERGDELRAVVARNAERQSLRDQLREIGQRIGDTLSQVRDGLRNTA
DTIRDRLSQAAAVVMDRGRGSVERQAEGPKAEIAGERTTDSIRERLSRAAASIKERDDMQEKDTGSTAER
LSQRLEKDDSSDRGGADRPRENSTEDRIAERLRDHLGGKEMDKDMEEHVRRIEVDLSRGIER
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
T4CP
| ID | 4469 | GenBank | WP_137396176 |
| Name | t4cp2_CFBP4996_RS26610_pAtCFBP4996c |
UniProt ID | _ |
| Length | 530 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
T4CP protein sequence
Download Length: 530 a.a. Molecular weight: 57712.27 Da Isoelectric Point: 7.0753
>WP_137396176.1 type IV secretory system conjugative DNA transfer family protein [Agrobacterium leguminum]
MERTKAIIRVIILAPVAALLGVLVGGMLGVVGSGIEAALGLGTDAIGRIMQLVGAVLGAIGGVFIVIRRY
FPKGTVSDVFGTARWAQAKDTKPLTESHDGLLIGRDLRKPDLFRYDGAAHLITLAPTRTGKGVGAIIPNL
LTADRSVICIDPKGENARVTGRRREAIGKAFYLDPFGVSGKPGSAYNPLDALDPAAVDLAEDAATIADAL
VFDPPGQVSDNHWNEESKALITGMILYAVCHEEPENRTLATVRDYLTLAPDQFKGLLTLMQQSREARGLI
ARAANRQIGKSEREGAGVLSNAQRHTHFLDSPRIHDVTARSDFRFADLKTDKATVFLILPPDRLDTYARW
LRLLLAQALTDMARSPAKPEKPVLFMLDEFAALGRLDPVERAMGLMAGYGLQLWPILQDIHQLRALYGEK
AGTFFSNAGVIQTFGVNDYETAEWISKTLGQATIEFSTHQHGKSTSGPLATTRTQGVSQQLTGRALLTPD
EVMHNPENEQILMVKDMPPVAARKLRYFEDKEFSGLYDQP
MERTKAIIRVIILAPVAALLGVLVGGMLGVVGSGIEAALGLGTDAIGRIMQLVGAVLGAIGGVFIVIRRY
FPKGTVSDVFGTARWAQAKDTKPLTESHDGLLIGRDLRKPDLFRYDGAAHLITLAPTRTGKGVGAIIPNL
LTADRSVICIDPKGENARVTGRRREAIGKAFYLDPFGVSGKPGSAYNPLDALDPAAVDLAEDAATIADAL
VFDPPGQVSDNHWNEESKALITGMILYAVCHEEPENRTLATVRDYLTLAPDQFKGLLTLMQQSREARGLI
ARAANRQIGKSEREGAGVLSNAQRHTHFLDSPRIHDVTARSDFRFADLKTDKATVFLILPPDRLDTYARW
LRLLLAQALTDMARSPAKPEKPVLFMLDEFAALGRLDPVERAMGLMAGYGLQLWPILQDIHQLRALYGEK
AGTFFSNAGVIQTFGVNDYETAEWISKTLGQATIEFSTHQHGKSTSGPLATTRTQGVSQQLTGRALLTPD
EVMHNPENEQILMVKDMPPVAARKLRYFEDKEFSGLYDQP
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 7152 | GenBank | NZ_CP120215 |
| Plasmid name | pAtCFBP4996c | Incompatibility group | - |
| Plasmid size | 9262 bp | Coordinate of oriT [Strand] | 6104..6137 [-] |
| Host baterium | Agrobacterium leguminum strain CFBP4996 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | AcrIIC2 |