Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 106694
• Name: oriT_M19|unnamed7
• Organism: Lactiplantibacillus plantarum subsp. plantarum strain M19
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CP094392 (3376..3408 [+], 33 nt)
• oriT length: 33 nt
• IRs (inverted repeats): 1..8, 10..17 (CCACTAAA..TTTAGTGG)
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 33 nt

>oriT_M19|unnamed7
CCACTAAATTTTAGTGGGGTGTAAGTGCGCATT

oriT secondary structure

Predicted by RNAfold.

Relaxase

mobQ_KMY87_RS16710_M19|unnamed7

• ID: 4426
• GenBank: WP_214463162
• Name: mobQ_KMY87_RS16710_M19|unnamed7
• UniProt ID: _
• Length: 387 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 387 a.a.
• Molecular weight: 44120.31 Da
• Isoelectric Point: 9.5420

>WP_214463162.1 MobQ family relaxase [Lactiplantibacillus plantarum]
MAIYHLSLKTISRSKGQSAVASSAYRSGSKLKDRETGETKDFTKKHGVAYSEIQLPTQAPEKYKDREELW
NAVEEKESKSNSQLAREVEVALPAELERPTQIKLVHDYVQTNFVDRGMCADWSIHDKEDGNPHAHIMLTT
RAIKKNGTWAPKQKSTYVLDEDGAKVPQIDSKTGQQKIGARGRKMWQRTTESYTDWNDRNNTEIWRKSWA
ESCNQYLAPENKIDHRSYERQGVEQMPTIHEGHVAREMGDRSERVQTNIDIKASNRELSGLSATIAKIQE
EARKLFRQIAELTELIRKRAQEKAEAKRQVEQLAQTGPAQPEPAEPTPNVADNFLKQLNADKAKQAKSAP
PEESVAGDFLKKLHSDRSKRQDHKYRERTHDQGGPKL

Protein domains

Predicted by InterproScan.

• MobA/MobL family (MobA_MobL) (17-250)

Protein structure

No available structure.

Host bacterium

• ID: 7131
• GenBank: NZ_CP094392
• Plasmid name: M19|unnamed7
• Incompatibility group: -
• Plasmid size: 17237 bp
• Coordinate of oriT [Strand]: 3376..3408 [+]
• Host baterium: Lactiplantibacillus plantarum subsp. plantarum strain M19

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -