Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   106655
Name   oriT_CJ0611A1|unnamed in_silico
Organism   Clostridium botulinum strain CJ0611A1
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP059678 (2492..2517 [-], 26 nt)
oriT length   26 nt
IRs (inverted repeats)      2..10, 17..25  (TAAAGTATA..TATACTTTA)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 26 nt

>oriT_CJ0611A1|unnamed
ATAAAGTATAATATGCTATACTTTAC

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   4403 GenBank   WP_004441187
Name   mobV_GNZ07_RS18260_CJ0611A1|unnamed insolico UniProt ID   _
Length   393 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 393 a.a.        Molecular weight: 46243.16 Da        Isoelectric Point: 7.1438

>WP_004441187.1 MobV family relaxase [Clostridium botulinum]
MSYLVCTMKKMKKDNLFGLQKHNQRESENHNNKDIDKNKSDLNYDLVNENKINLSEKVFDLIEKIRESEK
AIRKDAVLLDEFIISSDRDFFKNMNENEIKKFFETSKQFFAERYGEENIISANVHLDETTPHMHLDVCPL
RNGRLQSKNIFTRNELRNIQEELPKTLKNNGFEIERGVKGSTQKHIDIQTLKAREEKKLKELKEKNKEIE
LKIASRKEKLEEVKDLDFQIKSKKTVLNNLNQGNDCLDEDIKYKLDGFDVKMDYVEFRKFQTQIASIKKV
KKENEDLKNENSIVHKKCSDLRKSQEEVSSRFTNWIDNTYKHMSLDSREQFKRRGSESLANGSTGNYDED
STLDKSVMDSKAFNEDVYIKCANEKENALKEPKMSSNGFEIDW

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(1-192)


  Protein structure



No available structure.




Host bacterium

ID   7092 GenBank   NZ_CP059678
Plasmid name   CJ0611A1|unnamed Incompatibility group   -
Plasmid size   5926 bp Coordinate of oriT [Strand]   2492..2517 [-]
Host baterium   Clostridium botulinum strain CJ0611A1

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -