Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 106643 |
| Name | oriT_RHB02-E4-C07|unnamed1  |
| Organism | Escherichia marmotae strain RHB02-E4-C07 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP099352 (47034..47317 [-], 284 nt) |
| oriT length | 284 nt |
| IRs (inverted repeats) | 183..188, 190..195 (AAAAGT..ACTTTT) 45..50, 55..60 (TTTTAA..TTAAAA) |
| Location of nic site | 108..109 |
| Conserved sequence flanking the nic site |
TTTGGTTAAA |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 284 nt
>oriT_RHB02-E4-C07|unnamed1
GTTATTGCCGCTTAATGCCGATAACGATTCGGGCTTTGCTATTTTTTTAAGCGATTAAAATTTCGTTAGCAAGCGCAGGGTTTTTTGATAAAATTCTGGTTAGTTTGGTTAAAAAGTGTTACAAGTAAGGCCAATGGATGAATGGTTAGTTTTAAGACTCAAATAGGCAGTATTAAAATTCCAAAAGTTACTTTTCATCATTCAAAAACCAAACTTTAATTTCATGTAGAAGATTAGTGCAATTGTATTGACGCAAGGACAATCCGCACATGTCAGAATCAGAT
GTTATTGCCGCTTAATGCCGATAACGATTCGGGCTTTGCTATTTTTTTAAGCGATTAAAATTTCGTTAGCAAGCGCAGGGTTTTTTGATAAAATTCTGGTTAGTTTGGTTAAAAAGTGTTACAAGTAAGGCCAATGGATGAATGGTTAGTTTTAAGACTCAAATAGGCAGTATTAAAATTCCAAAAGTTACTTTTCATCATTCAAAAACCAAACTTTAATTTCATGTAGAAGATTAGTGCAATTGTATTGACGCAAGGACAATCCGCACATGTCAGAATCAGAT
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Host bacterium
| ID | 7080 | GenBank | NZ_CP099352 |
| Plasmid name | RHB02-E4-C07|unnamed1 | Incompatibility group | IncY |
| Plasmid size | 116771 bp | Coordinate of oriT [Strand] | 47034..47317 [-] |
| Host baterium | Escherichia marmotae strain RHB02-E4-C07 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | terW, terZ, terA, terB, terC, terD, terE |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |