Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 106607 |
| Name | oriT_pST3606-4  |
| Organism | Salmonella enterica subsp. enterica strain 3018683606 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP094336 (958..1134 [-], 177 nt) |
| oriT length | 177 nt |
| IRs (inverted repeats) | 103..108, 122..127 (ACAATC..GATTGT) 49..54, 57..62 (CAGTTT..AAACTG) |
| Location of nic site | 68..69 |
| Conserved sequence flanking the nic site |
ACTGGCATAA |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 177 nt
>oriT_pST3606-4
GATGTAACTCCGTGCGTGATGAAAAATCGCATTTTAGCGCGTCACTGGCAGTTTAAAAACTGAACTGGCATAATGCGAAAAAACCACGAAGTGCGCACTTATACAATCTTCACTCCGTTTCGATTGTGTGCGCCCTGCGGGGCTGAAAGAACACGACAAAAAGGCATTACGGCAGAA
GATGTAACTCCGTGCGTGATGAAAAATCGCATTTTAGCGCGTCACTGGCAGTTTAAAAACTGAACTGGCATAATGCGAAAAAACCACGAAGTGCGCACTTATACAATCTTCACTCCGTTTCGATTGTGTGCGCCCTGCGGGGCTGAAAGAACACGACAAAAAGGCATTACGGCAGAA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 4386 | GenBank | WP_050963243 |
| Name | mobQ_MQF88_RS25535_pST3606-4 |
UniProt ID | _ |
| Length | 715 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 715 a.a. Molecular weight: 81020.50 Da Isoelectric Point: 7.8391
>WP_050963243.1 MULTISPECIES: MobQ family relaxase [Enterobacteriaceae]
MAIYHLSMKIISRNSGYSAVASAAYRSGSLMLDERTGLTHDYTRKSGVAEAVILTPATAPAWCTNRAELW
NAVEKAERRKNSQLAREIELAIPRELPQDAARETVLAFVRENFVSQGMIADVAFHHMDKTNPHAHIMLTM
RAVGPAGFGGKVRDWNDRTHAEAWRASWADHANRALANAGYQEEIDHRSYERQGLEKTPGIHLGKSACAM
ETRGIETERGEQNRLINRLNLEIQISRTELRSSGLTEPARRVADLLNIVLPDNATSYTLRDIIEALPKDS
NAAWKLTSNAMSMMADMQATRRRWEELNTERKEAMSHATSLKKSSPFSSGFSRIPLMQWAAPEYRSEQGK
IQSLSQQMEKLRQHYRKVEKQDIPASQTAFEKQWQQWGASGLAALRVQLLKREEELRRKEQEDTERSRAE
QLGKNDNAVMDSGVLSAVVTGYGEAPMPGNGEMTCYLLLHNRNGEYTLWGNELEKYRTRIFERVDLMRDR
SGYICDRSEIGQLPPLQRVYSSATFEQLLTQVCQTWPQHTRNLRQPKTWPESFCLGEDRQPAMPSLAARK
VDFTQGRLPPTLMPVMSSVDRETRQLQLLLVMGVDDSLGGVVRLNGTLYPAFAVPSVDNSQLVISALTDK
GLRYAGYGVAVNHDADSHISPAPELMEFHLKTREAPLFAAVNTPEKQPDHLFRSLGFNRTWEEWQLEEDA
RTHATVRRHDRGWSQ
MAIYHLSMKIISRNSGYSAVASAAYRSGSLMLDERTGLTHDYTRKSGVAEAVILTPATAPAWCTNRAELW
NAVEKAERRKNSQLAREIELAIPRELPQDAARETVLAFVRENFVSQGMIADVAFHHMDKTNPHAHIMLTM
RAVGPAGFGGKVRDWNDRTHAEAWRASWADHANRALANAGYQEEIDHRSYERQGLEKTPGIHLGKSACAM
ETRGIETERGEQNRLINRLNLEIQISRTELRSSGLTEPARRVADLLNIVLPDNATSYTLRDIIEALPKDS
NAAWKLTSNAMSMMADMQATRRRWEELNTERKEAMSHATSLKKSSPFSSGFSRIPLMQWAAPEYRSEQGK
IQSLSQQMEKLRQHYRKVEKQDIPASQTAFEKQWQQWGASGLAALRVQLLKREEELRRKEQEDTERSRAE
QLGKNDNAVMDSGVLSAVVTGYGEAPMPGNGEMTCYLLLHNRNGEYTLWGNELEKYRTRIFERVDLMRDR
SGYICDRSEIGQLPPLQRVYSSATFEQLLTQVCQTWPQHTRNLRQPKTWPESFCLGEDRQPAMPSLAARK
VDFTQGRLPPTLMPVMSSVDRETRQLQLLLVMGVDDSLGGVVRLNGTLYPAFAVPSVDNSQLVISALTDK
GLRYAGYGVAVNHDADSHISPAPELMEFHLKTREAPLFAAVNTPEKQPDHLFRSLGFNRTWEEWQLEEDA
RTHATVRRHDRGWSQ
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 7044 | GenBank | NZ_CP094336 |
| Plasmid name | pST3606-4 | Incompatibility group | Col8282 |
| Plasmid size | 4059 bp | Coordinate of oriT [Strand] | 958..1134 [-] |
| Host baterium | Salmonella enterica subsp. enterica strain 3018683606 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |