Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   106497
Name   oriT_pLCK3 in_silico
Organism   Leuconostoc citreum KM20
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NC_010467 (3756..3789 [-], 34 nt)
oriT length   34 nt
IRs (inverted repeats)     _
Location of nic site      16..17
Conserved sequence flanking the
  nic site    		  TGTGTGGTGT
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 34 nt

>oriT_pLCK3
CCACCAATTTATGTGTGGTGTGTAAGTGCGCATT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   4327 GenBank   WP_012304820
Name   mobV_LCK_RS09230_pLCK3 insolico UniProt ID   B1N0I6
Length   411 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 411 a.a.        Molecular weight: 47410.78 Da        Isoelectric Point: 6.7845

>WP_012304820.1 MobV family relaxase [Leuconostoc citreum]
MAHLKKNTRGAVPCLAVHFERKTDHHSNKEIDVAKTYLNQDLISDDSDMISRFNERLNDVYCMKRDDVKA
LATWIVTLPEELSEAPYEQQSAFFQATKQFLDDRYGQENAVAAVVHYDETTPHLHYAFVPVVFDAKKERY
KVSAKEVLTRHDLQTFHDDLDQTLKQTLPFYEQGILNNKTLPFENVAEIKKYNDQFKALKEELANVEENI
SAKKALLKVTNQALTEVDLAEKQIDDFKQALSKNLFGKTVIKPDDLDRFKSVLANMKKATLQGQRDAAAS
NQALLKIKDQFAELQADYQQLKDTHQALQQRVRESQQMDYAMRDMLKNDYGVEKIPHSDVEARYVLYRLD
HEQLTKSKKEATSWLAMLKTARENPDSKIASSRLERGIEQVKALINRIIELTRDLFKGPSL

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(1-175)


  Protein structure


Source ID Structure
AlphaFold DB B1N0I6


Host bacterium

ID   6934 GenBank   NC_010467
Plasmid name   pLCK3 Incompatibility group   -
Plasmid size   17971 bp Coordinate of oriT [Strand]   3756..3789 [-]
Host baterium   Leuconostoc citreum KM20

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -