Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   106474
Name   oriT_LkipL48 in_silico
Organism   Leuconostoc kimchii IMSNU 11154
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NC_014135 (2740..2764 [+], 25 nt)
oriT length   25 nt
IRs (inverted repeats)      1..9, 16..24  (TAAAGTATA..TATACTTTA)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 25 nt

>oriT_LkipL48
TAAAGTATAGTGGGTTATACTTTAC

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   4316 GenBank   WP_013102152
Name   mobV_LKI_RS00455_LkipL48 insolico UniProt ID   D5SZU1
Length   361 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 361 a.a.        Molecular weight: 41984.33 Da        Isoelectric Point: 7.7166

>WP_013102152.1 MobV family relaxase [Leuconostoc kimchii]
MSFIVARMTKLKADNLVGIGNHDQRKTTNHSNEDIDVSRSHLNYDLVAGRTDNFKTDIEAYINENKASKR
AVRKDAVLVNEWILTSDKDFFEQLDEADTRKYFETAKQYFADNYGDENIRYAVVHMDEKTPHMHMGIVPF
DDDKKLSAKRIFNREALQHIQEELPQYLKENGFDVERGNKNKERKNLSVPEYKAMREDLKKIETEKQETQ
AKLADMKKRLDEIKPRDNKKIASKPTLLNKNKMTVDKNDLADLEQRAVTSDAYNLEKIHLEVENHSLRND
LSEAKGRNYELKKENEQLQKLVGTLQGIIRNVDEFLHKKLGINLPDKWLERSGLKEPSKKAPESSQRLDR
HKSDELGGPHL

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(1-194)


  Protein structure


Source ID Structure
AlphaFold DB D5SZU1


Host bacterium

ID   6911 GenBank   NC_014135
Plasmid name   LkipL48 Incompatibility group   -
Plasmid size   3196 bp Coordinate of oriT [Strand]   2740..2764 [+]
Host baterium   Leuconostoc kimchii IMSNU 11154

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -