Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   106473
Name   oriT_LkipL4704 in_silico
Organism   Leuconostoc kimchii IMSNU 11154
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NC_014132 (16150..16178 [-], 29 nt)
oriT length   29 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 29 nt

>oriT_LkipL4704
ATTTTAGAAGTGGGGTGTAAGTGCGCATT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   4315 GenBank   WP_013102094
Name   mobV_LKI_RS00100_LkipL4704 insolico UniProt ID   D5SZL3
Length   411 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 411 a.a.        Molecular weight: 47558.76 Da        Isoelectric Point: 6.7899

>WP_013102094.1 MobV family relaxase [Leuconostoc kimchii]
MAHLKKNTRGSVPGLAVHFERKTDHHTNKEIDVSKTYLNQELMADGSDMLSRFNERLNDVYCMKRDDVKA
LATWIVTLPEELTEASYEQQSAFFEATSNFLNDRYGQENTVAAVVHYDETTPHLHYAFVPVVFDDKKSRY
KVSAKEVLTRHDLQTFHDDLDQHLKKVLPFYEQGILNHKTLPFENVAEIKKYNDQFNALKNELADVEDNI
RAKQAVLKITDQALTEVDLAEKQIDDFKQALSKNLFGKTVLKPDDLDRFKNVLATMKKATLQSQHETEEL
KQTLGQVKAQLADVQADYQNLKETHQALQKRQREQQQLDYAMRDILKNDYAVDKLSHTDVEARYVLYKLD
HEERTKNKKVAQSWLKTLTTARADPDTKIAPTRLDRGIEQVKALINRIIELTRDLFKGPSL

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(1-167)


  Protein structure


Source ID Structure
AlphaFold DB D5SZL3


Host bacterium

ID   6910 GenBank   NC_014132
Plasmid name   LkipL4704 Incompatibility group   -
Plasmid size   23275 bp Coordinate of oriT [Strand]   16150..16178 [-]
Host baterium   Leuconostoc kimchii IMSNU 11154

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -