Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 106469
• Name: oriT_b1-3|unnamed2
• Organism: Aeromonas veronii strain b1-3
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CP091142 (2517..2545 [-], 29 nt)
• oriT length: 29 nt
• IRs (inverted repeats): 2..9, 13..20 (GACTTTAC..GTAAAGTC)
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 29 nt

>oriT_b1-3|unnamed2
CGACTTTACGAAGTAAAGTCTAGTGAGTA

oriT secondary structure

Predicted by RNAfold.

Relaxase

mobV_L1O00_RS21565_b1-3|unnamed2

• ID: 4313
• GenBank: WP_139714641
• Name: mobV_L1O00_RS21565_b1-3|unnamed2
• UniProt ID: _
• Length: 335 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 335 a.a.
• Molecular weight: 37518.99 Da
• Isoelectric Point: 10.3363

>WP_139714641.1 MobV family relaxase [Aeromonas veronii]
MAAFAIMRCKKLSGMGSVAASLKHCFRERDTPNADPERLRHNMHMAARSTDEAMGKLREKLPETRRKDAV
LAIEYVLSASPEWWINADSGRKADFYQSSMDWLAEKYGRENILVSSIHLDEKTPHMSAFVVPITKDGRLS
AKEFIGNRTKMSNDQSSYAEAVKHLGLVRGIEGSKATHKRIKAHYNALGQQIPVPPEIREEELKPQSEQG
PGLLGKIGLRPMIETPLGVADRLNAKFAKAFKVVAEKASESDSQRGEAVKARAALADTQKRLQALQEPFK
GLSKEQVAEVLKQAVAMQQDNQRRQQEQDLARKLEAEIRRKMAPEQGPKPRGFSR

Protein domains

Predicted by InterproScan.

• Plasmid recombination enzyme (Mob_Pre) (1-185)

Protein structure

No available structure.

Host bacterium

• ID: 6906
• GenBank: NZ_CP091142
• Plasmid name: b1-3|unnamed2
• Incompatibility group: -
• Plasmid size: 3703 bp
• Coordinate of oriT [Strand]: 2517..2545 [-]
• Host baterium: Aeromonas veronii strain b1-3

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -