Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 106423 |
| Name | oriT_GRL1118|p2  |
| Organism | Lactobacillus amylovorus GRL1118 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NC_017472 (67177..67201 [+], 25 nt) |
| oriT length | 25 nt |
| IRs (inverted repeats) | 1..9, 16..24 (TAAAGTATA..TATACTTTA) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 25 nt
>oriT_GRL1118|p2
TAAAGTATAGTTGGTTATACTTTAC
TAAAGTATAGTTGGTTATACTTTAC
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 4288 | GenBank | WP_014566309 |
| Name | Replic_Relax_LAB52_RS09685_GRL1118|p2 |
UniProt ID | _ |
| Length | 617 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 617 a.a. Molecular weight: 70508.57 Da Isoelectric Point: 9.6600
>WP_014566309.1 hypothetical protein [Lactobacillus amylovorus]
MINFKNNFKTISITDDQFLLIKQIANLGFVTKPQLEMIYSIIKNKPTSISNHILNKLVNKDKVLNRIQSN
ESQNRIKQIAYVISRYGRNLLSAYHCFYRDPRSFGINFHNLQANEVVIQALYASNFKPTALGSNNSSLRF
NDEEKTVSITNSFGSTFTLPTFDVPFYDKKVPKPVVSRLNEDYFIKNADLARLPELLTEGLLVGGITDKK
LRLSLDSKAQSTFSSEKGNEDDDWFVQDLSFLKNPRLLRYISFFKPFLSKKFIEEMQSYQGLTKMSGLRG
VGAHVKLVKISNFYQQLLKRSNCYYFLLNLYQNLLNIDNKKQSLATVGNYWQQLATGNNNYQELVTFTNS
TLKKDTLDKNLAIIKPIGLLPFRVGSDFDDRIQRASLALRGFNYHLKLTEFDTRPFNAQLGITPTKKDNT
AFEADTMITFKRNNKVQSVFIELDNRTEGSATQAQKILNYIEYANQHPNDNFLLAIVSADGSLPTNKLKQ
YTYPDQHLGVLVDKMLRIRVGEGQQTEDGRLVKATPYLIELYERCPNLKIIFAGLSEAPMRIAEFIVNAN
HNIDYISSAFVLARSISKETQWDVTFDPTIEVKEAIKNTPALVDTTYNQLHYNVSGL
MINFKNNFKTISITDDQFLLIKQIANLGFVTKPQLEMIYSIIKNKPTSISNHILNKLVNKDKVLNRIQSN
ESQNRIKQIAYVISRYGRNLLSAYHCFYRDPRSFGINFHNLQANEVVIQALYASNFKPTALGSNNSSLRF
NDEEKTVSITNSFGSTFTLPTFDVPFYDKKVPKPVVSRLNEDYFIKNADLARLPELLTEGLLVGGITDKK
LRLSLDSKAQSTFSSEKGNEDDDWFVQDLSFLKNPRLLRYISFFKPFLSKKFIEEMQSYQGLTKMSGLRG
VGAHVKLVKISNFYQQLLKRSNCYYFLLNLYQNLLNIDNKKQSLATVGNYWQQLATGNNNYQELVTFTNS
TLKKDTLDKNLAIIKPIGLLPFRVGSDFDDRIQRASLALRGFNYHLKLTEFDTRPFNAQLGITPTKKDNT
AFEADTMITFKRNNKVQSVFIELDNRTEGSATQAQKILNYIEYANQHPNDNFLLAIVSADGSLPTNKLKQ
YTYPDQHLGVLVDKMLRIRVGEGQQTEDGRLVKATPYLIELYERCPNLKIIFAGLSEAPMRIAEFIVNAN
HNIDYISSAFVLARSISKETQWDVTFDPTIEVKEAIKNTPALVDTTYNQLHYNVSGL
Protein domains
No domain identified.
Protein structure
No available structure.
Host bacterium
| ID | 6860 | GenBank | NC_017472 |
| Plasmid name | GRL1118|p2 | Incompatibility group | - |
| Plasmid size | 78145 bp | Coordinate of oriT [Strand] | 67177..67201 [+] |
| Host baterium | Lactobacillus amylovorus GRL1118 |
Cargo genes
| Drug resistance gene | tet(W) |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |