Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 106416
• Name: oriT_C5|unnamed4
• Organism: Staphylococcus hominis strain C5
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CP093543 (754..775 [-], 22 nt)
• oriT length: 22 nt
• IRs (inverted repeats): _
• Location of nic site: 12..13
• Conserved sequence flanking the nic site: GTGTGTTATA
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 22 nt

>oriT_C5|unnamed4
AAGTCTAGTGTGTTATACTTTA

oriT secondary structure

Predicted by RNAfold.

Relaxase

mobV_MOV58_RS12340_C5|unnamed4

• ID: 4285
• GenBank: WP_053090581
• Name: mobV_MOV58_RS12340_C5|unnamed4
• UniProt ID: _
• Length: 533 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 533 a.a.
• Molecular weight: 63219.47 Da
• Isoelectric Point: 9.8506

>WP_053090581.1 MobV family relaxase [Staphylococcus hominis]
MSYSIIRVSKVKGKTNTTGIQKHVQRENKNYENADVDLTKSYMNYDLINSNSIDFNQKIDEKIEQNYNGK
RKIRKDAIKHVDGIITSDNQFFSGKSDKDIKRFFEDSKAFLCEEYGEDNLLYATVHLDEATPHMHFGVVP
LTEDGRLSAKDVLGNKKALTEFQDRFNHYINHKGHDLKRGTSKHKTERQHREVEQYKRDTEYYKNRKDEE
VRKVVHFKNLTVDNKLQFESMQGQLETVKNKYNKMSKAIDRFEQKKLPKLKDEFYDIKNRTAEEKAKFKT
LKQDIDQSEHKLKGLNADINHKQQAFNDLEAHIARIRAKKEEEEEYYQSLKNVLYEPLNNEFEYEYKKRS
LFSKESEPTGRVILKEEDYKTLKEQADFGKRMEPEYRKLIKGEKVQSLEKTVLDQRGEINGNRRKLNAAS
KKFEKLTKEKDNYKSAYEDEQTKHENTRKFVKAVCHLGKDIFGGKNYRRIVNKIDDNINPKYKKAFRNMI
ALDREVMIMFKQKDEKSRKHIAFENNATIKTKQEKDKGFDLEL

Protein domains

Predicted by InterproScan.

• Plasmid recombination enzyme (Mob_Pre) (1-197)

Protein structure

No available structure.

Host bacterium

• ID: 6853
• GenBank: NZ_CP093543
• Plasmid name: C5|unnamed4
• Incompatibility group: -
• Plasmid size: 3766 bp
• Coordinate of oriT [Strand]: 754..775 [-]
• Host baterium: Staphylococcus hominis strain C5

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -