Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   106377
Name   oriT_pWpK4.1 in_silico
Organism   Weissella paramesenteroides strain WpK4
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CM014767 (4074..4109 [-], 36 nt)
oriT length   36 nt
IRs (inverted repeats)      1..6, 11..16  (CTTTAC..GTAAAG)
Location of nic site      25..26
Conserved sequence flanking the
  nic site    		  GTGTGTTATA
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 36 nt

>oriT_pWpK4.1
CTTTACGAATGTAAAGTATAGTGTGTTATACTTTAC

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   4269 GenBank   WP_056950758
Name   mobV_EWR19_RS00020_pWpK4.1 insolico UniProt ID   A0A202F2G9
Length   361 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 361 a.a.        Molecular weight: 42210.44 Da        Isoelectric Point: 8.3188

>WP_056950758.1 MULTISPECIES: MobV family relaxase [Lactobacillaceae]
MSFAVARMTKLKADNLVGIGNHDQRKTTNHSNEDIDVSRSHLNYDLVVGRTDNFKTDIEAYINENKASKR
AVRKDAVLVNEWILTSDKDFFEQLDEAETRKYFETAKQYFADNYGDENIRYAVVHMDEKTPHMHMGIVPF
DDDKKLSAKRIFNREALQRIQEEFPQYLKENGFDVERGNKNKERKNLSVPEYKAMREELKKIETEKQETQ
VKLAHTKKQLDEIKPRDNKKIASKPTLMNKNKVTVDKSDLADLEQRASFSDNYNQMHARARREADSLGDK
LTRTTWEYNDLERENVRLRKLVGTLQDIVRNVDEFLHKKLGINLPEKWLERAGLKEPSKKAPESSQEFDR
HKSDELGGPHL

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(1-194)


  Protein structure


Source ID Structure
AlphaFold DB A0A202F2G9


Host bacterium

ID   6814 GenBank   NZ_CM014767
Plasmid name   pWpK4.1 Incompatibility group   -
Plasmid size   4209 bp Coordinate of oriT [Strand]   4074..4109 [-]
Host baterium   Weissella paramesenteroides strain WpK4

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -