Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 106365 |
| Name | oriT_P201982|unnamed  |
| Organism | Salmonella enterica strain P201982 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP093393 (14937..14990 [-], 54 nt) |
| oriT length | 54 nt |
| IRs (inverted repeats) | _ |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 54 nt
>oriT_P201982|unnamed
CACAAGCATTGTAACATGCCCGGAACGGGCTTGTGTACAAAGCTTATCGTGCCT
CACAAGCATTGTAACATGCCCGGAACGGGCTTGTGTACAAAGCTTATCGTGCCT
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
T4CP
| ID | 4287 | GenBank | WP_103758099 |
| Name | t4cp2_MOV21_RS23310_P201982|unnamed |
UniProt ID | _ |
| Length | 652 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
T4CP protein sequence
Download Length: 652 a.a. Molecular weight: 73461.99 Da Isoelectric Point: 9.1391
>WP_103758099.1 MULTISPECIES: type IV secretory system conjugative DNA transfer family protein [Enterobacteriaceae]
MDAKKTGGLILFLLLLLVGVLIASNYLGGYTALRYSSVDMSLLKWDTFHSVISTFSGNPQYKKLVFMAWF
GFSVPLIFFAIFMLIVVIGIMPKKVIYGDARLATDMDLSKSGFFPDKKSPYKHPPILIGKMFKGRYKKQF
IYFAGQQFLILYAPTRSGKGVGIVIPNCVNYPGSMVILDIKLENWFLSAGFRQKELGQECFLFAPAGYAE
TIDQAIKGQIRSHRWNPLDCVSRSDLLRETDLAKIAAILIPASDDPIWSDSARNLFVGLGLYLLDKERFH
LEQKAKGHNVPDVLVSISAILKTSVPDNGKDLATWMGQEIENRSWISDKTKSFFFEFMSAPDRTRGSIKT
NFSSPLNIFSNPITAEATNFSDFDIRDIRKKPMSIYLGLTPDALITHEKIVNLFFSLLVNENCRELPEHN
PDLKYQCLILLDEFTSMGKSEVIERAVGFTAGYNLRFMFILQNEGQGQKSDMYGQEGWTTFTENSAVVLY
YPPKSKNALAKKISEEIGVRDMKISKRSISSGGGKGGSSRTRNDDVIERPVLLPEEIVSLRDKKNKARNI
AIREIITSEFSRPFIANKIIWFEEPEFKRRVDIARNNHVDIPNLFTQEVMDEIAKIAEIYLPKAGGKKVM
VAGGNVITNPDLDNHDKTDVSE
MDAKKTGGLILFLLLLLVGVLIASNYLGGYTALRYSSVDMSLLKWDTFHSVISTFSGNPQYKKLVFMAWF
GFSVPLIFFAIFMLIVVIGIMPKKVIYGDARLATDMDLSKSGFFPDKKSPYKHPPILIGKMFKGRYKKQF
IYFAGQQFLILYAPTRSGKGVGIVIPNCVNYPGSMVILDIKLENWFLSAGFRQKELGQECFLFAPAGYAE
TIDQAIKGQIRSHRWNPLDCVSRSDLLRETDLAKIAAILIPASDDPIWSDSARNLFVGLGLYLLDKERFH
LEQKAKGHNVPDVLVSISAILKTSVPDNGKDLATWMGQEIENRSWISDKTKSFFFEFMSAPDRTRGSIKT
NFSSPLNIFSNPITAEATNFSDFDIRDIRKKPMSIYLGLTPDALITHEKIVNLFFSLLVNENCRELPEHN
PDLKYQCLILLDEFTSMGKSEVIERAVGFTAGYNLRFMFILQNEGQGQKSDMYGQEGWTTFTENSAVVLY
YPPKSKNALAKKISEEIGVRDMKISKRSISSGGGKGGSSRTRNDDVIERPVLLPEEIVSLRDKKNKARNI
AIREIITSEFSRPFIANKIIWFEEPEFKRRVDIARNNHVDIPNLFTQEVMDEIAKIAEIYLPKAGGKKVM
VAGGNVITNPDLDNHDKTDVSE
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
T4SS
T4SS were predicted by using oriTfinder2.
Region 1: 30089..53230
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MOV21_RS23550 | 27644..27865 | - | 222 | Protein_33 | shufflon system plasmid conjugative transfer pilus tip adhesin PilV | - |
| MOV21_RS23260 (MOV21_23260) | 28151..29437 | - | 1287 | WP_000750514 | shufflon system plasmid conjugative transfer pilus tip adhesin PilV | - |
| MOV21_RS23265 (MOV21_23265) | 29450..30085 | - | 636 | WP_044704741 | A24 family peptidase | - |
| MOV21_RS23270 (MOV21_23270) | 30089..30571 | - | 483 | WP_001258095 | lytic transglycosylase domain-containing protein | virB1 |
| MOV21_RS23275 (MOV21_23275) | 30637..31194 | - | 558 | WP_044704742 | type 4 pilus major pilin | - |
| MOV21_RS23280 (MOV21_23280) | 31239..32348 | - | 1110 | WP_000974903 | type II secretion system F family protein | - |
| MOV21_RS23285 (MOV21_23285) | 32339..33877 | - | 1539 | WP_000466225 | ATPase, T2SS/T4P/T4SS family | virB11 |
| MOV21_RS23290 (MOV21_23290) | 33902..34396 | - | 495 | WP_000912553 | type IV pilus biogenesis protein PilP | - |
| MOV21_RS23295 (MOV21_23295) | 34380..35690 | - | 1311 | WP_001454111 | type 4b pilus protein PilO2 | - |
| MOV21_RS23300 (MOV21_23300) | 35741..37384 | - | 1644 | WP_052941533 | PilN family type IVB pilus formation outer membrane protein | - |
| MOV21_RS23305 (MOV21_23305) | 37377..37907 | - | 531 | WP_020246093 | sigma 54-interacting transcriptional regulator | virb4 |
| MOV21_RS23310 (MOV21_23310) | 37954..39912 | - | 1959 | WP_103758099 | type IV secretory system conjugative DNA transfer family protein | - |
| MOV21_RS23315 (MOV21_23315) | 39928..40983 | - | 1056 | WP_242101073 | P-type DNA transfer ATPase VirB11 | virB11 |
| MOV21_RS23320 (MOV21_23320) | 41002..42141 | - | 1140 | WP_097516077 | TrbI/VirB10 family protein | virB10 |
| MOV21_RS23325 (MOV21_23325) | 42131..42832 | - | 702 | WP_049824867 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| MOV21_RS23330 (MOV21_23330) | 42898..43632 | - | 735 | WP_000432283 | type IV secretion system protein | virB8 |
| MOV21_RS23335 | 43632..43766 | - | 135 | WP_023155252 | hypothetical protein | - |
| MOV21_RS23340 (MOV21_23335) | 43798..46155 | - | 2358 | WP_000548953 | VirB4 family type IV secretion system protein | virb4 |
| MOV21_RS23345 (MOV21_23340) | 46161..46481 | - | 321 | WP_000362080 | VirB3 family type IV secretion system protein | virB3 |
| MOV21_RS23350 (MOV21_23345) | 46552..46842 | - | 291 | WP_061103483 | TrbC/VirB2 family protein | virB2 |
| MOV21_RS23355 (MOV21_23350) | 46842..47426 | - | 585 | WP_001177114 | lytic transglycosylase domain-containing protein | virB1 |
| MOV21_RS23360 (MOV21_23355) | 47447..47845 | - | 399 | WP_001153669 | hypothetical protein | - |
| MOV21_RS23365 (MOV21_23360) | 48184..48621 | - | 438 | WP_000539666 | type IV pilus biogenesis protein PilM | - |
| MOV21_RS23370 (MOV21_23365) | 48627..49862 | - | 1236 | WP_000733400 | toxin co-regulated pilus biosynthesis Q family protein | - |
| MOV21_RS23375 (MOV21_23370) | 49865..50152 | - | 288 | WP_001326593 | TrbM/KikA/MpfK family conjugal transfer protein | - |
| MOV21_RS23380 (MOV21_23375) | 50324..50959 | - | 636 | WP_000835773 | hypothetical protein | - |
| MOV21_RS23385 (MOV21_23380) | 51032..51319 | - | 288 | WP_001032611 | EexN family lipoprotein | - |
| MOV21_RS23390 (MOV21_23385) | 51332..51586 | - | 255 | WP_001043555 | EexN family lipoprotein | - |
| MOV21_RS23395 (MOV21_23390) | 51588..52229 | - | 642 | WP_001425343 | type IV secretion system protein | - |
| MOV21_RS23400 (MOV21_23395) | 52235..53230 | - | 996 | WP_001028543 | type IV secretion system protein | virB6 |
| MOV21_RS23405 (MOV21_23400) | 53234..53491 | - | 258 | WP_000739144 | hypothetical protein | - |
| MOV21_RS23410 (MOV21_23405) | 53488..53790 | - | 303 | WP_001360345 | hypothetical protein | - |
| MOV21_RS23415 (MOV21_23410) | 54205..54666 | - | 462 | WP_001243167 | hypothetical protein | - |
| MOV21_RS23420 (MOV21_23415) | 54677..54847 | - | 171 | WP_000550720 | hypothetical protein | - |
| MOV21_RS23425 (MOV21_23420) | 54851..55294 | - | 444 | WP_000964330 | NfeD family protein | - |
| MOV21_RS23430 (MOV21_23425) | 55668..56621 | - | 954 | WP_072089442 | SPFH domain-containing protein | - |
| MOV21_RS23435 (MOV21_23430) | 56648..56824 | - | 177 | WP_000753048 | hypothetical protein | - |
| MOV21_RS23440 (MOV21_23435) | 56817..57032 | - | 216 | WP_001127357 | DUF1187 family protein | - |
| MOV21_RS23445 (MOV21_23440) | 57025..57477 | - | 453 | WP_000101552 | CaiF/GrlA family transcriptional regulator | - |
Host bacterium
| ID | 6802 | GenBank | NZ_CP093393 |
| Plasmid name | P201982|unnamed | Incompatibility group | IncI2 |
| Plasmid size | 58608 bp | Coordinate of oriT [Strand] | 14937..14990 [-] |
| Host baterium | Salmonella enterica strain P201982 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |