Detailed information of oriT
oriT
The information of the oriT region
oriTDB ID | 106354 |
Name | oriT_FL-8|unnamed1 |
Organism | Lactiplantibacillus paraplantarum strain FL-8 |
Sequence Completeness | - |
NCBI accession of oriT (coordinates [strand]) | NZ_CP118746 (3530..3666 [-], 137 nt) |
oriT length | 137 nt |
IRs (inverted repeats) | 21..28, 42..49 (AAAAGGGG..CCCCTTTT) 25..30, 39..44 (GGGGAA..TTCCCC) |
Location of nic site | 104..105 |
Conserved sequence flanking the nic site |
GCTTGCAGCA |
Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 137 nt
>oriT_FL-8|unnamed1
CGACACAATCCAAAGGGGATAAAAGGGGAAAGTGAAACTTCCCCCTTTTCAAGCCACATTGTAATACAAGAACGAAGTGCTTTGTATTACAATGTGATAGCTTGCAGCATTTATGGTTTTATATGGTCCATTTTGTT
CGACACAATCCAAAGGGGATAAAAGGGGAAAGTGAAACTTCCCCCTTTTCAAGCCACATTGTAATACAAGAACGAAGTGCTTTGTATTACAATGTGATAGCTTGCAGCATTTATGGTTTTATATGGTCCATTTTGTT
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure fileHost bacterium
ID | 6791 | GenBank | NZ_CP118746 |
Plasmid name | FL-8|unnamed1 | Incompatibility group | - |
Plasmid size | 8916 bp | Coordinate of oriT [Strand] | 3530..3666 [-] |
Host baterium | Lactiplantibacillus paraplantarum strain FL-8 |
Cargo genes
Drug resistance gene | - |
Virulence gene | - |
Metal resistance gene | - |
Degradation gene | - |
Symbiosis gene | - |
Anti-CRISPR | - |