Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 106353
• Name: oriT_DSM 10667|unnamed3
• Organism: Lactiplantibacillus paraplantarum strain DSM 10667
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CP032747 (3090..3110 [-], 21 nt)
• oriT length: 21 nt
• IRs (inverted repeats): _
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 21 nt

>oriT_DSM 10667|unnamed3
AGTGGGGTGTAAGTGCGCATT

oriT secondary structure

Predicted by RNAfold.

Relaxase

mobQ_LP667_RS16000_DSM 10667|unnamed3

• ID: 4254
• GenBank: WP_121018964
• Name: mobQ_LP667_RS16000_DSM 10667|unnamed3
• UniProt ID: _
• Length: 687 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 687 a.a.
• Molecular weight: 80586.33 Da
• Isoelectric Point: 9.6589

>WP_121018964.1 MobQ family relaxase [Lactiplantibacillus paraplantarum]
MAIFHMSFSNISAGKGRSAIASAAYRSGEKLFDDKEGRHYFYARSVMPESFILTPKNAPSWASDREQLWN
EVERKDRRANSRYAKEFNVALPVELIEDEQKELLTKYVQENFVNEGMVADVAIHRDHPDNPHAHVMLTNR
PFNPDGTWGIKSKKQYILDKNGNKTYTRTSKYPKSRKILMVNWDKKEKIIEWRHNWAVSVNQVLEQKNIP
DRISEKSFTEQGIDDKPTQHEGINSKRHERKEFNQQVKNYRKAKASYKNNQEKVINRGHLDSLSKHLSFN
EKRVVNELSHELKTYISLESLDDKRRMLFNWKNSTLIKHAVGEDVTKELLTINQQESSLKKADELLNKVV
DRTTKKLYPELNFEQTTQAERRELIKETDSEQTVFKGSELNERLMNIRDDLLTQQLLTFTKRPYVGWKLL
MQQEKEVKIELKYTLMIHDDNLESLEHVDQGLLEKYSPTEQQKITRAVKDLRAIMAVKQVIKTQYHEVLK
RAFPKGDLDGLPLIKQEQAYTAVMYYDPVLKPFQAETIEQWQANPPQVFSPQEHQQGLAYLSGQLSLDQL
ENHHLQRVLKHDGTKQLFLGECKVDPTIKNSQIEKIQKQLKGQQAKDDQYRKANIGRYQPLNYKPVSPDY
YLKTAFSNAIMTALYARDEDYQRQKQAQGLKETEWEMTKKQRQHQTRNRHEDGGMHL

Protein domains

Predicted by InterproScan.

• MobA/MobL family (MobA_MobL) (17-241)

• Nicking enzyme C-terminal middle helical domain (NES_C_h) (276-384)

Protein structure

No available structure.

Host bacterium

• ID: 6790
• GenBank: NZ_CP032747
• Plasmid name: DSM 10667|unnamed3
• Incompatibility group: -
• Plasmid size: 49020 bp
• Coordinate of oriT [Strand]: 3090..3110 [-]
• Host baterium: Lactiplantibacillus paraplantarum strain DSM 10667

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: arsB
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -