Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   106350
Name   oriT_SJTUF10057|unnamedB in_silico
Organism   Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10057
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP047552 (1777..1954 [+], 178 nt)
oriT length   178 nt
IRs (inverted repeats)      104..109, 123..128  (ACAATC..GATTGT)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 178 nt

>oriT_SJTUF10057|unnamedB
GATGTAACTCCGTGCGCGATGAAAAATCGCATTTTAGCGCGTCACTGGTAGTTTAAAAACTGAGCTGGCATAATGCACGGCAAATCACGAAGTGCGCACTTATACAATCTCCACTCCGTTTCGATTGTGTGCGCCCTGCGGGGCTGAAAGAAAACTACAAAAAGGCATTACGGCAGAA

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   4251 GenBank   WP_084568118
Name   mobQ_DXN07_RS25750_SJTUF10057|unnamedB insolico UniProt ID   _
Length   719 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 719 a.a.        Molecular weight: 81799.22 Da        Isoelectric Point: 8.4418

>WP_084568118.1 MULTISPECIES: MobQ family relaxase [Salmonella]
MAIYHLSMKIISRSSGYSAVASAAYRSGSLMLDERTGLTHDYTRKSGVAEAVILTPATAPAWCTNRAELW
NAVEKAERRKNSQLAREIELAIPRELPQDAARETVLAFVRENFVSQGMIADVAFHHMDKTNPHAHIMLTT
RAVGPAGFGGKVRDWNDRTHAETWRASWADHANRALANAGYQEEIDHRSYERQGLEKTPGIHLGKSACAM
ETRGIETERGEQNRLINRLNLEIQISRTELRNSGLTEPARRVADLLNIVLPDNATSYTLRDIIEALPKDS
NAAWKLTSNAMSMMADMQATRRRWEELNTERKEAMSHAASLKKSSPFSSGFSRIPLMQWAAPEYRSEQGK
IQSLSQQMEKLRQHYRKVEKQDIPASQTAFEKQWQQWGASGLAALRVQLLKREEELRRKEQEDTERSRTE
RRAEQLRKNDNAVMDSGVLSAVVTGYGEAPMPGNGEMTCYLLLHNRNGEYTLWGNELEKYRTRIFERVDL
MRDRSGYICDRSEIGQHPPLQRVYSSATFEQLLTQVCQTWPQYTRNLRQPKTWPESFCLGEDRQPAMPSL
AARKVDFTQGRLPPTLMPVMSSVDRETRQLQLLLVMGVDDSLGGVVRLNGTLYPAFAVPSADNSQLVISA
LTDKGLRYAGYGVAVNHDADSHISPAPELMEFHLKTREVPLFAAVNTPEKQPDHLFRSLGFNRTWDEWRR
EEDARTHTTERRHDRGWSQ

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(18-213)


  Protein structure



No available structure.




Host bacterium

ID   6787 GenBank   NZ_CP047552
Plasmid name   SJTUF10057|unnamedB Incompatibility group   Col8282
Plasmid size   4074 bp Coordinate of oriT [Strand]   1777..1954 [+]
Host baterium   Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10057

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -