Detailed information of oriT
oriT
The information of the oriT region
oriTDB ID | 106332 |
Name | oriT_162829|unnamed2 |
Organism | Salmonella enterica subsp. enterica serovar Java strain 162829 |
Sequence Completeness | - |
NCBI accession of oriT (coordinates [strand]) | NZ_CM019091 (1614..1674 [+], 61 nt) |
oriT length | 61 nt |
IRs (inverted repeats) | _ |
Location of nic site | _ |
Conserved sequence flanking the nic site |
_ |
Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 61 nt
>oriT_162829|unnamed2
GGGTGTCGGGGCGCAGCCCTGACCCAGTTCACAGAGCGATAGCGATGTGTATACTGGCTTA
GGGTGTCGGGGCGCAGCCCTGACCCAGTTCACAGAGCGATAGCGATGTGTATACTGGCTTA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure fileHost bacterium
ID | 6769 | GenBank | NZ_CM019091 |
Plasmid name | 162829|unnamed2 | Incompatibility group | - |
Plasmid size | 3373 bp | Coordinate of oriT [Strand] | 1614..1674 [+] |
Host baterium | Salmonella enterica subsp. enterica serovar Java strain 162829 |
Cargo genes
Drug resistance gene | - |
Virulence gene | - |
Metal resistance gene | - |
Degradation gene | - |
Symbiosis gene | - |
Anti-CRISPR | - |