Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   106328
Name   oriT_pXJ22MSE2-2 in_silico
Organism   Moellerella wisconsensis strain XJ22MSE2
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP120976 (13396..13437 [+], 42 nt)
oriT length   42 nt
IRs (inverted repeats)      7..13, 25..31  (CGTTTCT..AGAAACG)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 42 nt

>oriT_pXJ22MSE2-2
GCGCACCGTTTCTAAACAAAGTGAAGAAACGTCTAAGTGCGC

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   4233 GenBank   WP_277850727
Name   MobA_MobL_P8A16_RS17715_pXJ22MSE2-2 insolico UniProt ID   _
Length   371 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 371 a.a.        Molecular weight: 43328.96 Da        Isoelectric Point: 6.1740

>WP_277850727.1 MobA/MobL family protein [Moellerella wisconsensis]
MASYHLSVKTGGKGKAASHADYIAREGKYVSEKDNDLEHTESGNMPAWAVHKPFEFWKAADTFERANGCT
YREIEIALPRELKPEQRLELVRDFIQQEIGDRHAYQFAIHNPRAAIEGGEQPHAHIMFSERLNDGIERDP
QQYFKRANSKEPEHGGAKKVRFGETPTERKAYLIAQRERWATLQNNHLERYQHPDRVDARSLKEQGLERE
PERHFGAGQVRQFEPAQLHAVMERREAERQAQHCRDECNSVIDVITTLREALSERDNLTPKHEQTSEPQS
EATSDRAFDFEKEPEKLTPLINDALSEIQNEIDLQSLINDSMAEFQGIHQKMVKQQEREYWAEQQHQQEK
ERQRLAEQKREKPDKGWSFSR

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(42-218)


  Protein structure



No available structure.




Host bacterium

ID   6765 GenBank   NZ_CP120976
Plasmid name   pXJ22MSE2-2 Incompatibility group   ColE10
Plasmid size   14550 bp Coordinate of oriT [Strand]   13396..13437 [+]
Host baterium   Moellerella wisconsensis strain XJ22MSE2

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -