Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 106283 |
| Name | oriT_162744|unnamed3  |
| Organism | Salmonella enterica subsp. enterica serovar Kentucky strain 162744 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CM019089 (3349..3505 [-], 157 nt) |
| oriT length | 157 nt |
| IRs (inverted repeats) | 101..108, 118..125 (ACAAACTC..GAGTTTGT) |
| Location of nic site | 65..66 |
| Conserved sequence flanking the nic site |
ACTGGCATAA |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 157 nt
>oriT_162744|unnamed3
GTAACTCCGTGCGCGGTGAAAAATCGCATTTTAGCGCGTCACTGGTAGTTTAAAAACTGAACTGGCATAATGCACAGCAAATCACGAAGTGCGCACTTATACAAACTCTCCTTCGTCGAGTTTGTGTGCGCCCTGCGGGGCTAAAAGAAAACGGCAA
GTAACTCCGTGCGCGGTGAAAAATCGCATTTTAGCGCGTCACTGGTAGTTTAAAAACTGAACTGGCATAATGCACAGCAAATCACGAAGTGCGCACTTATACAAACTCTCCTTCGTCGAGTTTGTGTGCGCCCTGCGGGGCTAAAAGAAAACGGCAA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 4205 | GenBank | WP_061089184 |
| Name | mobQ_F1E33_RS00075_162744|unnamed3 |
UniProt ID | _ |
| Length | 715 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 715 a.a. Molecular weight: 81936.30 Da Isoelectric Point: 7.3015
>WP_061089184.1 MULTISPECIES: MobQ family relaxase [Enterobacteriaceae]
MAIYHLSMKILSRSKGYSAVASAAYRAGEKILDERTGVIHDYTRKNGVASAVILTPANAPAWCANRAELW
NAVEKAERRKNSQLAREFELAIPRELAQDAARETVLNFVRENFVSRGMIADVAFHNLGGSNPHAHIMLSM
RAITPDGFGEKVREWNDWTHAETWRGSWADHANRALANAGYQEEIDHRSYERQGVEKTPGIHLGKSACAM
EKWGIETERGEQNRLINRLNLEIQVSRDELRNSELTEPARRMADLLNIELPDNATSYILHDIIEALPTDS
NAAWKLTSKAMSMMADMQATRRRWEDLNTERKEAMSHAASLKKSSPFSSGFSRIPLMQWVAPEYGREQEK
IQSLSQRMEKLRQHHWKVEKQDIPASQKAFETQWQQWGASGLADLREQLRKREEELRRKEQEETERRRAE
QLRRNDNAVMDSGVLKAVVTGYGEAPMPGNGEMTCYLLLHNRNGEYTLWGNELEKYRSRIFESVDLMRDR
SGYICDRSEIGQRPPLQRVYSSATFEQLLTQVCQTWPQHTRNLRQPKTWPESFCLGEDRQPAMPSLAARK
VDFTQGRLPPTLMPVMSSVDRETRQLQLLLVMGVDDSMGGVVRLNGTLYPAFAVPTADNSQLVINALTDK
GLRFAGYGEAVNHDADSPARPAPELMQFHLKTWSEPLFAIVNTPEKQPDHLFRSLGFERTWDEWQRDEYA
RTHATERRHDRGWSQ
MAIYHLSMKILSRSKGYSAVASAAYRAGEKILDERTGVIHDYTRKNGVASAVILTPANAPAWCANRAELW
NAVEKAERRKNSQLAREFELAIPRELAQDAARETVLNFVRENFVSRGMIADVAFHNLGGSNPHAHIMLSM
RAITPDGFGEKVREWNDWTHAETWRGSWADHANRALANAGYQEEIDHRSYERQGVEKTPGIHLGKSACAM
EKWGIETERGEQNRLINRLNLEIQVSRDELRNSELTEPARRMADLLNIELPDNATSYILHDIIEALPTDS
NAAWKLTSKAMSMMADMQATRRRWEDLNTERKEAMSHAASLKKSSPFSSGFSRIPLMQWVAPEYGREQEK
IQSLSQRMEKLRQHHWKVEKQDIPASQKAFETQWQQWGASGLADLREQLRKREEELRRKEQEETERRRAE
QLRRNDNAVMDSGVLKAVVTGYGEAPMPGNGEMTCYLLLHNRNGEYTLWGNELEKYRSRIFESVDLMRDR
SGYICDRSEIGQRPPLQRVYSSATFEQLLTQVCQTWPQHTRNLRQPKTWPESFCLGEDRQPAMPSLAARK
VDFTQGRLPPTLMPVMSSVDRETRQLQLLLVMGVDDSMGGVVRLNGTLYPAFAVPTADNSQLVINALTDK
GLRFAGYGEAVNHDADSPARPAPELMQFHLKTWSEPLFAIVNTPEKQPDHLFRSLGFERTWDEWQRDEYA
RTHATERRHDRGWSQ
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 6720 | GenBank | NZ_CM019089 |
| Plasmid name | 162744|unnamed3 | Incompatibility group | Col8282 |
| Plasmid size | 4091 bp | Coordinate of oriT [Strand] | 3349..3505 [-] |
| Host baterium | Salmonella enterica subsp. enterica serovar Kentucky strain 162744 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |