Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   106266
Name   oriT_PRO116|unnamed6 in_silico
Organism   Priestia flexa strain PRO116
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP120596 (1517..1556 [+], 40 nt)
oriT length   40 nt
IRs (inverted repeats)      1..7, 12..18  (ACTTTAC..GTAAAGT)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 40 nt

>oriT_PRO116|unnamed6
ACTTTACGGATGTAAAGTATAGTGTGCTATACTTTACATG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   4197 GenBank   WP_277717639
Name   mobV_P5663_RS21110_PRO116|unnamed6 insolico UniProt ID   _
Length   410 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 410 a.a.        Molecular weight: 48432.22 Da        Isoelectric Point: 9.5766

>WP_277717639.1 MobV family relaxase [Priestia flexa]
MSFAICRMEKMKSHDLKGMQFHNQRERESKTNPDIDKERSHLNYDLVNPDKIDYNKRVKEIIESQKTGTR
KTRKDAVLVNELLITSDRGFFDRLNPAEEKQFFEESYKLFADRYGEKNIAYAMVHMDEKTPHMHLGVVPM
RDGKLQGKHVFDRNELRWIQDEFPKHLQKQGFDVERGEKGSDREHLTTQQFKAKTLKEQVERLESSLSEK
QAAKQEIETSINEIEHRLSDLGKSLDQVKKVDEIDVKLEKKMGLFASNRVILERKDFEGIETLAKASEAL
KMENRQLKIENQKLHDGKDKLIMERDLVRNENMELKKENKQLKKENDFLKGTLERVKELYQEKLPELAKM
VGYVKASFLDKAKEKLLKRYFTDDNEIKGAQKFALDKQEQEKQIQSTRKRNRDREGGLER

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(1-193)


  Protein structure



No available structure.




Host bacterium

ID   6703 GenBank   NZ_CP120596
Plasmid name   PRO116|unnamed6 Incompatibility group   -
Plasmid size   10537 bp Coordinate of oriT [Strand]   1517..1556 [+]
Host baterium   Priestia flexa strain PRO116

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -