Detailed information of oriT
oriT
The information of the oriT region
oriTDB ID | 106210 |
Name | oriT_pKPT698-mcr |
Organism | Klebsiella pneumoniae subsp. pneumoniae strain T698-1 |
Sequence Completeness | - |
NCBI accession of oriT (coordinates [strand]) | NZ_CP079783 (51183..51232 [-], 50 nt) |
oriT length | 50 nt |
IRs (inverted repeats) | 7..14, 17..24 (GCAAAATT..AATTTTGC) |
Location of nic site | 33..34 |
Conserved sequence flanking the nic site |
TGTGTGGTGA |
Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 50 nt
>oriT_pKPT698-mcr
AAATCTGCAAAATTTTAATTTTGCGTAGTGTGTGGTGATTTTGTGGTGAG
AAATCTGCAAAATTTTAATTTTGCGTAGTGTGTGGTGATTTTGTGGTGAG
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure fileRelaxase
ID | 4161 | GenBank | WP_022631527 |
Name | traI_KYY07_RS27230_pKPT698-mcr | UniProt ID | U5N3A2 |
Length | 1752 a.a. | PDB ID | |
Note | Predicted by oriTfinder 2.0 |
Relaxase protein sequence
Download Length: 1752 a.a. Molecular weight: 190332.06 Da Isoelectric Point: 6.2397
>WP_022631527.1 MULTISPECIES: conjugative transfer relaxase/helicase TraI [Enterobacteriaceae]
MLSFSQVKSAGSAGNYYTEKDNYYVIGSMEERWQGKGAELLGLEGKVDKQVFTELLQGKLPDGSDLTRIQ
DGVNKHRPGYDLTFSAPKSVSMLAMLGGDKRLIDAHNRAVTVALNQVESLASTRVKKDGVSETVLTGNLI
IARFNHDTSRAQDPQIHTHSVVINATQNGDKWQTLASDTVGKTGFSETILANRIAFGKIYQNSLRADVES
MGYKTVDAGRNGMWEMEGVPVESFSTRSQELREAAGPDASLKSRDVAALDTRKSKEAIDPAEKMVEWMNT
LKETGFDIRGYREAADARAAELARAPAAPVNTDGPDITDVVTKAIAGLSDRKVQFTYADLLARTVGQLEA
KDGVFELARKGIDAAIEREQLIPLDREKGLFTSNIHVLDELAVKALSQEVQRQNHVSVTPDASVVRQVPF
SDAVSVLAQDRPVMGIVSGQGGATGQRERVAELTLMSREQGRDVHILAADNRSRDFLAGDVRLAGETVTG
KSALQDGTAFIPGGTLIVDQAEKLSLKETISLLDGAMRHNVQVLLSDSGKRSGTGSALTVLKDSGVNTYR
WQGGHQTTADIISEPDKGARYSRLAQEFAVSVREGQESVAQISGTREQSVLNGLIRDSLRQEGVLGEKDT
TITALTPVWLDSKSRGVRDYYREGMVMERWDPENRTHDRFVIDRVTASSNMLTLKDREGGRLDLKVSAVD
SQWTLFRADTLPVAEGERLAVLGKIPDTRLKGGESITVMKVEEGQLTVQRPGQKTTQTLAAGAGVFDGIK
VGHGWVESPGRSVSETATVFASVTQLELDNATLNQLAQSGSHLRLYSAQDAARTTEKLSRHTAFSVVSEQ
LKSRSGETDLDTAIAQQKAGLHTPAEQAIHLAIPLLESQDLTFSRPQLLATAMETGGGKVSMADIDTTIQ
AQIRSGQLLNVPVAHGYGNDLLISRQTWDAEKSILTHVLEGKGAVAPLMDRVPASLMTDLTAGQRAATRM
ILESTDRFTVVQGYAGVGKTTQFRAVMSAISLLPEETRPRVIGLAPTHRAVGEMQSAGVDARTTASFLHD
TQLLQRNGQTPDFSNTLFLLDESSMVGLADMAKAHSLIAAGGGRAVPSGDTDQLPPIASGQPFRLTQQRS
AADVAIMKEIVRQMPELRPAVYSLIERDVHRALTTIEQVTPEQVPRKEGAWAPGSSVVEFTPKQEKAIEK
ALSEGKTLPEGQPATLYEALVKDYTGRTPEAQSQTLVITHLNKDRRALNSLIHDARRENGETGKEEITLP
VLVTSNIRDGELRKLSTWTAHKEAVALVDNVYHRISKVDKDNQLITLTDSEGKERFISPREASAEGVTLY
RQEKITVSQGDRMRFSKSDPERGYVANSIWEVQSVSGDSVTLSDGKLTRTLTPKAEQAQQHIDLAYAITA
HGAQGASEPYAIALEGVAGGREQMASFESAYVALSRMKQHVQVYTDNREGWIKAIKHSPEKATAHDILEP
RNDRAVKTADLLFGRARPLDETAAGRAALQQSGLAQGSSPGKFISPGKKYPQPHVALPAFDKNGKAAGIW
LSPLTDRDGRLEAIGGGGRIMGNEDARFVALQNSRNGESLLAGNMGEGVRMARDNPDTGVVVRLAGDDRP
WNPGAMTGGRVWAEPAPVAPVPQAGADIILPPEVLAQRAAEEQQRREMEKQAEQTAREVAGEARKAGEPA
DRVKEVIGDVIRGLERDRPGTEKTTLPDDPQFRRQEAAIQQVASERLQRERLQAVERDMVRDLNREKTLG
GD
MLSFSQVKSAGSAGNYYTEKDNYYVIGSMEERWQGKGAELLGLEGKVDKQVFTELLQGKLPDGSDLTRIQ
DGVNKHRPGYDLTFSAPKSVSMLAMLGGDKRLIDAHNRAVTVALNQVESLASTRVKKDGVSETVLTGNLI
IARFNHDTSRAQDPQIHTHSVVINATQNGDKWQTLASDTVGKTGFSETILANRIAFGKIYQNSLRADVES
MGYKTVDAGRNGMWEMEGVPVESFSTRSQELREAAGPDASLKSRDVAALDTRKSKEAIDPAEKMVEWMNT
LKETGFDIRGYREAADARAAELARAPAAPVNTDGPDITDVVTKAIAGLSDRKVQFTYADLLARTVGQLEA
KDGVFELARKGIDAAIEREQLIPLDREKGLFTSNIHVLDELAVKALSQEVQRQNHVSVTPDASVVRQVPF
SDAVSVLAQDRPVMGIVSGQGGATGQRERVAELTLMSREQGRDVHILAADNRSRDFLAGDVRLAGETVTG
KSALQDGTAFIPGGTLIVDQAEKLSLKETISLLDGAMRHNVQVLLSDSGKRSGTGSALTVLKDSGVNTYR
WQGGHQTTADIISEPDKGARYSRLAQEFAVSVREGQESVAQISGTREQSVLNGLIRDSLRQEGVLGEKDT
TITALTPVWLDSKSRGVRDYYREGMVMERWDPENRTHDRFVIDRVTASSNMLTLKDREGGRLDLKVSAVD
SQWTLFRADTLPVAEGERLAVLGKIPDTRLKGGESITVMKVEEGQLTVQRPGQKTTQTLAAGAGVFDGIK
VGHGWVESPGRSVSETATVFASVTQLELDNATLNQLAQSGSHLRLYSAQDAARTTEKLSRHTAFSVVSEQ
LKSRSGETDLDTAIAQQKAGLHTPAEQAIHLAIPLLESQDLTFSRPQLLATAMETGGGKVSMADIDTTIQ
AQIRSGQLLNVPVAHGYGNDLLISRQTWDAEKSILTHVLEGKGAVAPLMDRVPASLMTDLTAGQRAATRM
ILESTDRFTVVQGYAGVGKTTQFRAVMSAISLLPEETRPRVIGLAPTHRAVGEMQSAGVDARTTASFLHD
TQLLQRNGQTPDFSNTLFLLDESSMVGLADMAKAHSLIAAGGGRAVPSGDTDQLPPIASGQPFRLTQQRS
AADVAIMKEIVRQMPELRPAVYSLIERDVHRALTTIEQVTPEQVPRKEGAWAPGSSVVEFTPKQEKAIEK
ALSEGKTLPEGQPATLYEALVKDYTGRTPEAQSQTLVITHLNKDRRALNSLIHDARRENGETGKEEITLP
VLVTSNIRDGELRKLSTWTAHKEAVALVDNVYHRISKVDKDNQLITLTDSEGKERFISPREASAEGVTLY
RQEKITVSQGDRMRFSKSDPERGYVANSIWEVQSVSGDSVTLSDGKLTRTLTPKAEQAQQHIDLAYAITA
HGAQGASEPYAIALEGVAGGREQMASFESAYVALSRMKQHVQVYTDNREGWIKAIKHSPEKATAHDILEP
RNDRAVKTADLLFGRARPLDETAAGRAALQQSGLAQGSSPGKFISPGKKYPQPHVALPAFDKNGKAAGIW
LSPLTDRDGRLEAIGGGGRIMGNEDARFVALQNSRNGESLLAGNMGEGVRMARDNPDTGVVVRLAGDDRP
WNPGAMTGGRVWAEPAPVAPVPQAGADIILPPEVLAQRAAEEQQRREMEKQAEQTAREVAGEARKAGEPA
DRVKEVIGDVIRGLERDRPGTEKTTLPDDPQFRRQEAAIQQVASERLQRERLQAVERDMVRDLNREKTLG
GD
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
T4CP
ID | 4180 | GenBank | WP_015065541 |
Name | traD_KYY07_RS27225_pKPT698-mcr | UniProt ID | _ |
Length | 770 a.a. | PDB ID | _ |
Note | Predicted by oriTfinder 2.0 |
T4CP protein sequence
Download Length: 770 a.a. Molecular weight: 86025.00 Da Isoelectric Point: 5.0577
>WP_015065541.1 MULTISPECIES: type IV conjugative transfer system coupling protein TraD [Enterobacterales]
MSFNAKDMTQGGQIANMRFRMFGQIANIIFYVLFILFWVLCGLMLMYRLSWQTFVNGCVYWWCTTLGPMR
DIIRSQPVYTIQYYGQSLEYTSEQILADKYTIWCGEQLWTSFVFAAVVSLVICIVTFFIASWVLGRQGKQ
QSEDENTGGRQLSDKPKEVARQMKRDGMASDIKIGDLPILKNSEIQNFCLHGTVGSGKSEVIRRLLNYVR
ARGDMAIIYDRSCEFVKSYYDPSLDKILNPLDSRCAAWDLWKECLTLPDFDNISNTLIPMGTKEDPFWQG
SGRTIFAEGAYLMREDDDRSYEKLVDTMLSIKIDKLRAYLQNTPAANLVEEKIEKTAISIRAVLTNYVKA
IRYLQGIEKNGEPFTIRDWMRGVREDRPNGWLFISSNADTHASLKPVISMWLSIAIRGLLAMGENRNRRV
WIFADELPTLHKLPDLVEILPEARKFGGCYVFGIQSYAQLEDIYGVKPAATLFDVMNTRAFFRSPSREIA
EFAAGEIGEKEILKASEQYSYGADPVRDGVSTGKEKERETLVSYSDIQTLPDLSCYVTLPGPYPAVKLAL
KYKPRPKIAEGFIPRTLDARVDARLSALLEAREAEGSLARALFTPDAPASGPADTNSHAGEQPEPVSQPA
PADMTVSPEPVKAPPTIKRPAAEPSVRTTEPSVLRVTTVPLIKPKAAAAAAAASTASSSGAPATAAGGTQ
QELAQQSAEQGQDMLPAGMNEDGVIEDMQAYDAWLADEQTQRDMQRREEVNINHSHRHDEQDDVEIGGNF
MSFNAKDMTQGGQIANMRFRMFGQIANIIFYVLFILFWVLCGLMLMYRLSWQTFVNGCVYWWCTTLGPMR
DIIRSQPVYTIQYYGQSLEYTSEQILADKYTIWCGEQLWTSFVFAAVVSLVICIVTFFIASWVLGRQGKQ
QSEDENTGGRQLSDKPKEVARQMKRDGMASDIKIGDLPILKNSEIQNFCLHGTVGSGKSEVIRRLLNYVR
ARGDMAIIYDRSCEFVKSYYDPSLDKILNPLDSRCAAWDLWKECLTLPDFDNISNTLIPMGTKEDPFWQG
SGRTIFAEGAYLMREDDDRSYEKLVDTMLSIKIDKLRAYLQNTPAANLVEEKIEKTAISIRAVLTNYVKA
IRYLQGIEKNGEPFTIRDWMRGVREDRPNGWLFISSNADTHASLKPVISMWLSIAIRGLLAMGENRNRRV
WIFADELPTLHKLPDLVEILPEARKFGGCYVFGIQSYAQLEDIYGVKPAATLFDVMNTRAFFRSPSREIA
EFAAGEIGEKEILKASEQYSYGADPVRDGVSTGKEKERETLVSYSDIQTLPDLSCYVTLPGPYPAVKLAL
KYKPRPKIAEGFIPRTLDARVDARLSALLEAREAEGSLARALFTPDAPASGPADTNSHAGEQPEPVSQPA
PADMTVSPEPVKAPPTIKRPAAEPSVRTTEPSVLRVTTVPLIKPKAAAAAAAASTASSSGAPATAAGGTQ
QELAQQSAEQGQDMLPAGMNEDGVIEDMQAYDAWLADEQTQRDMQRREEVNINHSHRHDEQDDVEIGGNF
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
T4SS
T4SS were predicted by using oriTfinder2.
Region 1: 50625..79530
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
KYY07_RS27020 (KYY07_26955) | 46603..46833 | + | 231 | WP_004118481 | hypothetical protein | - |
KYY07_RS27025 (KYY07_26960) | 47354..47779 | + | 426 | WP_032456807 | antirestriction protein | - |
KYY07_RS27030 (KYY07_26965) | 48015..48269 | + | 255 | WP_049139361 | DNA polymerase III subunit theta | - |
KYY07_RS27035 (KYY07_26970) | 48304..48621 | + | 318 | WP_004118473 | hypothetical protein | - |
KYY07_RS27040 (KYY07_26975) | 49409..50230 | + | 822 | WP_004152492 | DUF932 domain-containing protein | - |
KYY07_RS27045 (KYY07_26980) | 50263..50592 | + | 330 | WP_069335041 | DUF5983 family protein | - |
KYY07_RS27050 (KYY07_26985) | 50625..51110 | - | 486 | WP_001568108 | transglycosylase SLT domain-containing protein | virB1 |
KYY07_RS27055 (KYY07_26990) | 51501..51917 | + | 417 | WP_072145360 | conjugal transfer relaxosome DNA-binding protein TraM | - |
KYY07_RS27060 (KYY07_26995) | 52117..52836 | + | 720 | WP_015065526 | hypothetical protein | - |
KYY07_RS27065 (KYY07_27000) | 52969..53172 | + | 204 | WP_171486139 | TraY domain-containing protein | - |
KYY07_RS27070 (KYY07_27005) | 53237..53605 | + | 369 | WP_004194426 | type IV conjugative transfer system pilin TraA | - |
KYY07_RS27075 (KYY07_27010) | 53619..53924 | + | 306 | WP_004144424 | type IV conjugative transfer system protein TraL | traL |
KYY07_RS27080 (KYY07_27015) | 53944..54510 | + | 567 | WP_004144423 | type IV conjugative transfer system protein TraE | traE |
KYY07_RS27085 (KYY07_27020) | 54497..55237 | + | 741 | WP_164530159 | type-F conjugative transfer system secretin TraK | traK |
KYY07_RS27090 (KYY07_27025) | 55237..56661 | + | 1425 | WP_004194260 | F-type conjugal transfer pilus assembly protein TraB | traB |
KYY07_RS27095 (KYY07_27030) | 56775..57359 | + | 585 | WP_015065529 | type IV conjugative transfer system lipoprotein TraV | traV |
KYY07_RS27100 (KYY07_27035) | 57491..57901 | + | 411 | WP_032329942 | hypothetical protein | - |
KYY07_RS27105 (KYY07_27040) | 58007..58225 | + | 219 | WP_004152501 | hypothetical protein | - |
KYY07_RS27110 (KYY07_27045) | 58226..58537 | + | 312 | WP_004152502 | hypothetical protein | - |
KYY07_RS27115 (KYY07_27050) | 58604..59008 | + | 405 | WP_004152503 | hypothetical protein | - |
KYY07_RS27120 (KYY07_27055) | 59201..59443 | + | 243 | WP_226340492 | hypothetical protein | - |
KYY07_RS27125 (KYY07_27060) | 59451..59849 | + | 399 | WP_011977783 | hypothetical protein | - |
KYY07_RS27130 (KYY07_27065) | 59921..62560 | + | 2640 | WP_004152505 | type IV secretion system protein TraC | virb4 |
KYY07_RS27135 (KYY07_27070) | 62560..62949 | + | 390 | WP_004152506 | type-F conjugative transfer system protein TrbI | - |
KYY07_RS27140 (KYY07_27075) | 62949..63575 | + | 627 | WP_009309871 | type-F conjugative transfer system protein TraW | traW |
KYY07_RS27145 (KYY07_27080) | 63617..64006 | + | 390 | WP_004194992 | hypothetical protein | - |
KYY07_RS27150 (KYY07_27085) | 64003..64992 | + | 990 | WP_009309872 | conjugal transfer pilus assembly protein TraU | traU |
KYY07_RS27155 (KYY07_27090) | 65005..65643 | + | 639 | WP_164530161 | type-F conjugative transfer system pilin assembly protein TrbC | trbC |
KYY07_RS27160 (KYY07_27095) | 65702..67657 | + | 1956 | WP_013023827 | type-F conjugative transfer system mating-pair stabilization protein TraN | traN |
KYY07_RS27165 (KYY07_27100) | 67689..67943 | + | 255 | WP_004152674 | conjugal transfer protein TrbE | - |
KYY07_RS27170 (KYY07_27105) | 67921..68169 | + | 249 | WP_004152675 | hypothetical protein | - |
KYY07_RS27175 (KYY07_27110) | 68182..68508 | + | 327 | WP_004152676 | hypothetical protein | - |
KYY07_RS27180 (KYY07_27115) | 68529..69281 | + | 753 | WP_004152677 | type-F conjugative transfer system pilin assembly protein TraF | traF |
KYY07_RS27185 (KYY07_27120) | 69292..69531 | + | 240 | WP_004144400 | type-F conjugative transfer system pilin chaperone TraQ | - |
KYY07_RS27190 (KYY07_27125) | 69503..70060 | + | 558 | WP_013214031 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | traF |
KYY07_RS27195 (KYY07_27130) | 70106..70549 | + | 444 | WP_004194305 | F-type conjugal transfer protein TrbF | - |
KYY07_RS27200 (KYY07_27135) | 70527..71906 | + | 1380 | WP_164530163 | conjugal transfer pilus assembly protein TraH | traH |
KYY07_RS27205 (KYY07_27140) | 71906..74755 | + | 2850 | WP_013609534 | conjugal transfer mating-pair stabilization protein TraG | traG |
KYY07_RS27210 (KYY07_27145) | 74758..75291 | + | 534 | WP_014343486 | conjugal transfer protein TraS | - |
KYY07_RS27215 (KYY07_27150) | 75477..76208 | + | 732 | WP_164530164 | conjugal transfer complement resistance protein TraT | - |
KYY07_RS27220 (KYY07_27155) | 76400..77089 | + | 690 | WP_015065540 | hypothetical protein | - |
KYY07_RS27225 (KYY07_27160) | 77218..79530 | + | 2313 | WP_015065541 | type IV conjugative transfer system coupling protein TraD | virb4 |
Host bacterium
ID | 6647 | GenBank | NZ_CP079783 |
Plasmid name | pKPT698-mcr | Incompatibility group | IncFIA |
Plasmid size | 90695 bp | Coordinate of oriT [Strand] | 51183..51232 [-] |
Host baterium | Klebsiella pneumoniae subsp. pneumoniae strain T698-1 |
Cargo genes
Drug resistance gene | blaCTX-M-15, blaTEM-1B, mcr-8 |
Virulence gene | - |
Metal resistance gene | - |
Degradation gene | - |
Symbiosis gene | - |
Anti-CRISPR | - |