Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   106205
Name   oriT_pW18-2-e in_silico
Organism   Moellerella wisconsensis strain W18-2
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP093254 (4104..4148 [+], 45 nt)
oriT length   45 nt
IRs (inverted repeats)      7..13, 25..31  (CGTTTCT..AGAAACG)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 45 nt

>oriT_pW18-2-e
GCGCACCGTTTCTGAATGAAGTGAAGAAACGTCTAAGTGCGCCCT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   4156 GenBank   WP_241544020
Name   MobA_MobL_MNY64_RS18325_pW18-2-e insolico UniProt ID   _
Length   369 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 369 a.a.        Molecular weight: 42978.54 Da        Isoelectric Point: 6.2843

>WP_241544020.1 MobA/MobL family protein [Moellerella wisconsensis]
MASYHLSVKTGGKGKATSHADYIAREGKYAREKDNDLEHQESGNMTAWAAHKPSEFWKAADTFERANGCT
YREIEIALPRELTPTQRLELVRDFVQQEIGDRHAYQFAIHNPRAAIEGGEQPHAHIMFSERLNDGIERDP
QLYFKRANTKNPERGGAKKARFGETPTERKAYLIAQRERWADLQNKHLERYQHPDRVDARSLKAQGIERE
PERHFGAGQVRQFEPAQLHALMERREAERQAQHCREECNSVIDVTTTLREAFAERDNVTETPKCEVMQNA
TQGRTFDFEKESDKLNALVSDSLSEIQDEIDLQSLINDSMAEFQGIHQEMVKQQEREYWAEQQRQQEKER
QRLAEQKRQKPDDGWSFSR

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(24-218)


  Protein structure



No available structure.




Host bacterium

ID   6642 GenBank   NZ_CP093254
Plasmid name   pW18-2-e Incompatibility group   -
Plasmid size   6554 bp Coordinate of oriT [Strand]   4104..4148 [+]
Host baterium   Moellerella wisconsensis strain W18-2

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -