Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   106125
Name   oriT_LJX 0909|unnamed2 in_silico
Organism   Enterococcus faecalis strain LJX 0909
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP092909 (780..829 [+], 50 nt)
oriT length   50 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 50 nt

>oriT_LJX 0909|unnamed2
AATATCGCAACATGCTAGCATATTGCTCTGCTCGCAAAAAGAAAGCCTAC

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   4104 GenBank   WP_010715975
Name   mobV_MK744_RS14090_LJX 0909|unnamed2 insolico UniProt ID   _
Length   559 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 559 a.a.        Molecular weight: 65071.63 Da        Isoelectric Point: 8.8311

>WP_010715975.1 MULTISPECIES: MobV family relaxase [Bacteria]
MSKIVARMEKMKVGNLSGIQRHNQRETDNHSNPDIDIEKSHLNYDLVNHGSINYREKIKQIIESQRISKR
AVRKDAVLVNEWIITSDTAFFQENTDTQAFFTDVVAYFSDRCGRQNVAYATVHLDETTPHMHLGIVPMYE
GRLSSKQVFSRQSLLEIQEELPNYLKERGYAIERGLRGSPQKHLSVKEYKDVQKELQVSKQELANQEQIL
AEKERELHSYEQAIFRIDRLLEEKNEEVKGKVQAMNQLEAKRNEIINSLQTTVLPDLANVKEKKFSLNGL
KYVLSASDLSAIKSITKDFETLRTQNKHLKIDNNTLTQENKELKQVNHVQELQITDLTHELTLKKEQLTA
FEEKQLNYDQSEQIKQELDKTTQKVSVLETDNKRLKDKITDLTYDFSELNEKYQEIKLKFDGLTTYLHER
LGQAKETILFTIQQGVKYLQNAPKLKKSLERYSKDRTYLIDEKGTLFLPPDTGSKGVTMSLNPHFYPLKA
PFYNRETGCYEFVGEYMANGRSRTNTLQLSEEQVLEKKAFTFEQSTDKKAWQQSKKYSRDMSKGRGLSR

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(2-191)


  Protein structure



No available structure.




Host bacterium

ID   6562 GenBank   NZ_CP092909
Plasmid name   LJX 0909|unnamed2 Incompatibility group   -
Plasmid size   5107 bp Coordinate of oriT [Strand]   780..829 [+]
Host baterium   Enterococcus faecalis strain LJX 0909

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -