Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 106112
• Name: oriT_DD18|unnamed
• Organism: Streptococcus infantis strain DD18
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CM003841 (1334..1371 [-], 38 nt)
• oriT length: 38 nt
• IRs (inverted repeats): 1..6, 10..15 (CTTTAC..GTAAAG)
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 38 nt

>oriT_DD18|unnamed
CTTTACGAAGTAAAGTATAGTACGTTATACTTTACATG

oriT secondary structure

Predicted by RNAfold.

Relaxase

mobV_SINDD18_RS00005_DD18|unnamed

• ID: 4097
• GenBank: WP_061862645
• Name: mobV_SINDD18_RS00005_DD18|unnamed
• UniProt ID: _
• Length: 500 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 500 a.a.
• Molecular weight: 58433.37 Da
• Isoelectric Point: 6.4713

>WP_061862645.1 MULTISPECIES: MobV family relaxase [Streptococcus]
MSYMVARMQKMKVGNLGGAHKHNERIFEKHSNKDIDTSRSHLNYELTDRDRSVSYERQIKDYVNENKSSK
RGIRKDAVLCDEWIITSDKDFFEKLGQEQTRKFFETAKNYFAENYGENNVAYASVHLDESTPHMHLGIVP
MRNGKLSSKVMFNREELKHIQEDLPRYMNEHGFELQRGKRDSKEQHLSVADYKEKMGREALNQELLDLGA
PKYWHTEERRPATISEIQDYEDIGSLFTDSDVTFKIREATLEERFKWLDTHRNDLRADLGRLEGVLEKKI
DEYGKIDSEASERLSELSELNSEVNSRQEEIKGLKSDSKRLSDDVVRLERAHREKTQLLVEQSSNLSKIS
YRDLDRRRVAKELQEELENATPKLFGDGFNFTSDFVGRLKTFVSDVVEKLEQAVNQNELLRNALAGMKEA
KSRLENSLSHAEWKNQQLETENKALKLENRELKVSKNLLDDLSEVITEKEVTSLNKRLENLRETRELSRT
RHEPTKGRSI

Protein domains

Predicted by InterproScan.

• Plasmid recombination enzyme (Mob_Pre) (1-194)

Protein structure

No available structure.

Host bacterium

• ID: 6549
• GenBank: NZ_CM003841
• Plasmid name: DD18|unnamed
• Incompatibility group: -
• Plasmid size: 4723 bp
• Coordinate of oriT [Strand]: 1334..1371 [-]
• Host baterium: Streptococcus infantis strain DD18

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -