Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   106111
Name   oriT_pZN3-6kb in_silico
Organism   Proteus vulgaris strain ZN3
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP047347 (1104..1148 [+], 45 nt)
oriT length   45 nt
IRs (inverted repeats)      7..13, 25..31  (CGTTTCT..AGAAACG)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 45 nt

>oriT_pZN3-6kb
GCGCACCGTTTCTGAACGAAGTGAAGAAACGTCTAAGTGCGCCCT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   4096 GenBank   WP_164526977
Name   MobA_MobL_GTH24_RS21935_pZN3-6kb insolico UniProt ID   _
Length   371 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 371 a.a.        Molecular weight: 43206.78 Da        Isoelectric Point: 6.6114

>WP_164526977.1 MULTISPECIES: MobA/MobL family protein [Morganellaceae]
MASYHLSVKTGGKGKAASHADYIAREGKYAREKDNDLEHQESGNMPAWAAHKPSEFWKAADTFERANGCT
YREIEIALPRELTPAQRLELVRDFVQQEIGDRHAYQFAIHNPRAAIEGGEQPHAHIMFSERLNDGIERDP
QQYFKRANTKNPERGGAKKVRFGETPTERKAYLIAQRERWADLQNKHLERYQHIDRVDARSLKAQGIERE
PERHFGAGQVRQFEPAQLHALMERREAERQAQHCRDECNSVIDVTTTLREALSERDNLTLKHEQTSEPHS
KATSDKAFDFEKESDKLNALVSDALSEIQDEIDLQSLINDSMAEFQNIHQELVKQQEREYWAEQRRQQEN
ERQRLAEQKRQKPDKGWSFSR

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(42-218)


  Protein structure



No available structure.




Host bacterium

ID   6548 GenBank   NZ_CP047347
Plasmid name   pZN3-6kb Incompatibility group   ColE10
Plasmid size   6678 bp Coordinate of oriT [Strand]   1104..1148 [+]
Host baterium   Proteus vulgaris strain ZN3

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -