Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 106108 |
| Name | oriT_pZN5-floR-8kb  |
| Organism | Proteus sp. ZN5 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP047642 (5756..5860 [-], 105 nt) |
| oriT length | 105 nt |
| IRs (inverted repeats) | 6..11, 17..22 (GTTTCT..AGAAAC) |
| Location of nic site | 33..34 |
| Conserved sequence flanking the nic site |
GTGCGCCCTC |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 105 nt
>oriT_pZN5-floR-8kb
GGGCAGTTTCTTGAAGAGAAACCGGTAAGTGCGCCCTCCCGTAAAATGACGGTCGGGGTTTGCGGTGTCTGTGCTCCGATGATAGCATAATGACAAGCACATAAC
GGGCAGTTTCTTGAAGAGAAACCGGTAAGTGCGCCCTCCCGTAAAATGACGGTCGGGGTTTGCGGTGTCTGTGCTCCGATGATAGCATAATGACAAGCACATAAC
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 4093 | GenBank | WP_223820406 |
| Name | Mob_Pre_GTK47_RS20340_pZN5-floR-8kb |
UniProt ID | _ |
| Length | 103 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 103 a.a. Molecular weight: 11864.27 Da Isoelectric Point: 7.7517
>WP_223820406.1 MULTISPECIES: plasmid recombination protein [Gammaproteobacteria]
MGTVAAALQHCYRDRETPNADQERTPDNDHLAARSTDEAMGKLRERLPEKRRKDAVLAVEYVMSASPEWW
QTASADQQREFFKRSTEWLAACRKFRCSATAMN
MGTVAAALQHCYRDRETPNADQERTPDNDHLAARSTDEAMGKLRERLPEKRRKDAVLAVEYVMSASPEWW
QTASADQQREFFKRSTEWLAACRKFRCSATAMN
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 6545 | GenBank | NZ_CP047642 |
| Plasmid name | pZN5-floR-8kb | Incompatibility group | IncQ1 |
| Plasmid size | 8401 bp | Coordinate of oriT [Strand] | 5756..5860 [-] |
| Host baterium | Proteus sp. ZN5 |
Cargo genes
| Drug resistance gene | floR |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |