Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   106099
Name   oriT_pPC14A1 in_silico
Organism   Pectobacterium versatile strain 14A
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP034277 (5795..5836 [+], 42 nt)
oriT length   42 nt
IRs (inverted repeats)      8..13, 25..30  (GTTTCT..AGAAAC)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 42 nt

>oriT_pPC14A1
GCGCACAGTTTCTGAACGAAGTAAAGAAACGTCTAAGTGCGC

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   4090 GenBank   WP_125233383
Name   mobA_EIP93_RS22650_pPC14A1 insolico UniProt ID   _
Length   373 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 373 a.a.        Molecular weight: 43457.14 Da        Isoelectric Point: 6.3354

>WP_125233383.1 mobilization protein MobA [Pectobacterium versatile]
MASYHLSVKTGGKGNASPHADYISREGKYAREKDSDLEHKESGNMPAWAAHKPSEFWKAADTFERANGCT
YREIEIALPRELKPEQRLELVRDFVRQEIGDRHAYQFAIHNPKAAIAGGEQPHAHIMFSERMNDGIDRDP
QQYFKRANTKDPERGGAKKVRFGENPTERKEHLVAQRERWADLQNIHLERYQHTDRVDARSLKAQGIERE
PERHLGAGQVQRFDTDQLQAILERRDAERQAQQCRDERDSVIDVTTSLREALSERDTLTTKQAQQPEPEP
EQDAVSGRVFDFEKEPEKLNELVSDAMKEIQEEIDLQSLVNDAMAEFQGIHQEMVRQQERERLAEKQRQQ
EKERKRLSEQKRQKPDKGWSFSR

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(42-218)


  Protein structure



No available structure.




Host bacterium

ID   6536 GenBank   NZ_CP034277
Plasmid name   pPC14A1 Incompatibility group   ColE10
Plasmid size   7076 bp Coordinate of oriT [Strand]   5795..5836 [+]
Host baterium   Pectobacterium versatile strain 14A

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -