Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 106077
• Name: oriT_pGR0128-1842
• Organism: Lactiplantibacillus plantarum strain GR0128
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CP070850 (13678..13705 [-], 28 nt)
• oriT length: 28 nt
• IRs (inverted repeats): _
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 28 nt

>oriT_pGR0128-1842
AATTTTTAGTGGAGTGTAAGTGCGCATT

oriT secondary structure

Predicted by RNAfold.

Relaxase

Relaxase_JWR92_RS15485_pGR0128-1842

• ID: 4078
• GenBank: WP_020923868
• Name: Relaxase_JWR92_RS15485_pGR0128-1842
• UniProt ID: _
• Length: 389 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 389 a.a.
• Molecular weight: 44185.97 Da
• Isoelectric Point: 10.0373

>WP_020923868.1 MULTISPECIES: relaxase/mobilization nuclease domain-containing protein [Lactobacillaceae]
MATTHIKRSTSASRLVNYAEKRAIKKDGLNLDIQYAKSEFKQVRAVYGNPGKTQAYASRIAFSPLEFNPQ
DPHDQTTVLAVAKEVYAKAYPNQQVALYEHADTDSLHVHAVIGAINLETGQKMHGNWHQYRDHLVHITDQ
VCQENGLMVTRPDPNRHEKRSMAEIKLRAKQQPTWKDQIRQAVDHTMQNPLIRDFQAFQDDLKQQAVKVW
ERGKNLTYQLLGTNYKSRGTKLGLDYEKETIFNELASRQNQTRTNQQPERTVNPTIDPAQSDHSRTPELP
GHSDSTASHSQNVPRSTTSSDRTDRPTSQPTVSDDLKQLRQQQRQLAGPIKTDLTKRLRSIPKADQPDQS
GKSDRAQTNSNRTSQKQPAPQPTQRPSEPDHSRDDGPSR

Protein domains

Predicted by InterproScan.

• Relaxase/Mobilisation nuclease domain (Relaxase) (9-246)

Protein structure

No available structure.

Host bacterium

• ID: 6514
• GenBank: NZ_CP070850
• Plasmid name: pGR0128-1842
• Incompatibility group: -
• Plasmid size: 31995 bp
• Coordinate of oriT [Strand]: 13678..13705 [-]
• Host baterium: Lactiplantibacillus plantarum strain GR0128

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -