Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 106049 |
| Name | oriT_pM083782_1  |
| Organism | Staphylococcus aureus strain RIVM_M083782 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP096533 (23670..23710 [+], 41 nt) |
| oriT length | 41 nt |
| IRs (inverted repeats) | 14..22, 29..37 (TAAAGTATA..TATACTTTA) 2..8, 13..19 (ACTTTAT..ATAAAGT) |
| Location of nic site | 27..28 |
| Conserved sequence flanking the nic site |
GTGTGTTATA |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 41 nt
>oriT_pM083782_1
CACTTTATGAATATAAAGTATAGTGTGTTATACTTTACATG
CACTTTATGAATATAAAGTATAGTGTGTTATACTTTACATG
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 4063 | GenBank | WP_267428927 |
| Name | mobV_M1F48_RS14610_pM083782_1 |
UniProt ID | _ |
| Length | 420 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 420 a.a. Molecular weight: 49713.35 Da Isoelectric Point: 9.9297
>WP_267428927.1 MobV family relaxase [Staphylococcus aureus]
MSYAVCRMQKVKSPGLKGMQFHNQRERESRTNEDIDRERTHENYDLQNDKNINYNERVKDIIDSQKTGTR
KTRKDAVLVNELLVTSDRDFFERLDPGEQKRFFEESYKLFSERYGKQNIAYATVHNDEQTPHMHLGVVPM
RDGKLQGKNVFNRQELLWLQDKFPEHMKKQGFELKRGERGSDRKHIETAKFKKQTLEKEIDFLEKNLAVK
KDEWTAYSDKVKSDLEVPAKRHMKNVEVPTGEKSMFGLGKEIMKTEKKPTKNVVISERDYKNLVTAARDN
DKLKQHVRNLMSTDMAREYKKLSKEHGQVKEKYSGLVERFNENVNDYNELLEENKSLKSKISDLKRDVSL
IYESTKEFLKERTDGLKAFKNVFKGFVDKIKDKTAQFQEKHDLEPKKNEFELTHNREVKKERSRDQGMSL
MSYAVCRMQKVKSPGLKGMQFHNQRERESRTNEDIDRERTHENYDLQNDKNINYNERVKDIIDSQKTGTR
KTRKDAVLVNELLVTSDRDFFERLDPGEQKRFFEESYKLFSERYGKQNIAYATVHNDEQTPHMHLGVVPM
RDGKLQGKNVFNRQELLWLQDKFPEHMKKQGFELKRGERGSDRKHIETAKFKKQTLEKEIDFLEKNLAVK
KDEWTAYSDKVKSDLEVPAKRHMKNVEVPTGEKSMFGLGKEIMKTEKKPTKNVVISERDYKNLVTAARDN
DKLKQHVRNLMSTDMAREYKKLSKEHGQVKEKYSGLVERFNENVNDYNELLEENKSLKSKISDLKRDVSL
IYESTKEFLKERTDGLKAFKNVFKGFVDKIKDKTAQFQEKHDLEPKKNEFELTHNREVKKERSRDQGMSL
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 6486 | GenBank | NZ_CP096533 |
| Plasmid name | pM083782_1 | Incompatibility group | - |
| Plasmid size | 39628 bp | Coordinate of oriT [Strand] | 23670..23710 [+] |
| Host baterium | Staphylococcus aureus strain RIVM_M083782 |
Cargo genes
| Drug resistance gene | fexA, lsa(B), cfr, aadD, tet(L), dfrK |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | AcrIIA14, AcrIIA15 |