Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 106046
• Name: oriT_pM085090_3
• Organism: Staphylococcus aureus strain RIVM_M085090
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CP096525 (1062..1086 [+], 25 nt)
• oriT length: 25 nt
• IRs (inverted repeats): 2..7, 20..25 (TAAAGT..ACTTTA)
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 25 nt

>oriT_pM085090_3
ATAAAGTCTAGTATGTTATACTTTA

oriT secondary structure

Predicted by RNAfold.

Relaxase

mobV_M1F52_RS13970_pM085090_3

• ID: 4061
• GenBank: WP_119483344
• Name: mobV_M1F52_RS13970_pM085090_3
• UniProt ID: _
• Length: 544 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 544 a.a.
• Molecular weight: 64304.93 Da
• Isoelectric Point: 4.6709

>WP_119483344.1 MULTISPECIES: MobV family relaxase [Staphylococcus]
MSYSIIRVEKVKNSVNTTGIQKHVQRENNKYSNEDIQQELTQENYDLVNEEPINFNDEIEKKIEERYTVN
RAIRKDAVKHIDGIVTTDKNYFDDLTLEQTRDYFNDSLDFIKDEYGEENILYATVHMDEATPHMHFGVVP
ITDDGRLSAKKMLGNKKAFTDFQNRYNEYMNQRGYNLERGKSKHITGAKHEEMNAYKQKTNYHKQEMERQ
QKEVESLKDEKQNIEKEMNEQITSSKAHIDDLQDKYKELGEMYEKDKERLEKPLNIQYEHEIKEEGGLFN
KQEVKTGNVVLKQEEFDELLEQSKSANRILDRYDDLNSGTEITELRNQIDEMNKDIDKLIDSDKENKREK
EQLRSKNKQLSNINQSLKTENKKQLEVINGVKDTFHNTMNAFEKVLGKDRFKNCVLKVDKMLNNNQFFRN
LVVGFDDKYKEIFTRNDKLNLAKENMYVSQKMDIKDMDKQVIEAEFESMNGVFTKEVNVSDEKFMEYLNQ
PEKYMMVVPMSMDDEPLFMSIDDIDLDKPLEFDKDLGIGDSQEIDIDLGLDLER

Protein domains

Predicted by InterproScan.

• Plasmid recombination enzyme (Mob_Pre) (1-198)

Protein structure

No available structure.

Host bacterium

• ID: 6483
• GenBank: NZ_CP096525
• Plasmid name: pM085090_3
• Incompatibility group: -
• Plasmid size: 3971 bp
• Coordinate of oriT [Strand]: 1062..1086 [+]
• Host baterium: Staphylococcus aureus strain RIVM_M085090

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -