Detailed information of oriT
oriT
The information of the oriT region
oriTDB ID | 105963 |
Name | oriT1_pRHB42-C13_3 |
Organism | Escherichia fergusonii strain RHB42-C13 |
Sequence Completeness | - |
NCBI accession of oriT (coordinates [strand]) | NZ_CP056938 (571..658 [+], 88 nt) |
oriT length | 88 nt |
IRs (inverted repeats) | _ |
Location of nic site | _ |
Conserved sequence flanking the nic site |
_ |
Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 88 nt
>oriT1_pRHB42-C13_3
GGGTGTCGGGGCGCAGCCCTGACCAGGTGGTAATTGTGATAGCGTCGCGTGTGACGGTATTACAATTACACATCCTGTCCCGATTTTT
GGGTGTCGGGGCGCAGCCCTGACCAGGTGGTAATTGTGATAGCGTCGCGTGTGACGGTATTACAATTACACATCCTGTCCCGATTTTT
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure fileHost bacterium
ID | 6400 | GenBank | NZ_CP056938 |
Plasmid name | pRHB42-C13_3 | Incompatibility group | ColpVC |
Plasmid size | 2064 bp | Coordinate of oriT [Strand] | 571..658 [+]; 989..1071 [-] |
Host baterium | Escherichia fergusonii strain RHB42-C13 |
Cargo genes
Drug resistance gene | - |
Virulence gene | - |
Metal resistance gene | - |
Degradation gene | - |
Symbiosis gene | - |
Anti-CRISPR | - |