Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   105957
Name   oriT_pYR11 in_silico
Organism   Yersinia ruckeri strain NVI-10587
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP099810 (4953..4985 [-], 33 nt)
oriT length   33 nt
IRs (inverted repeats)      1..7, 11..17  (GTTTCTC..GAGAAAC)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 33 nt

>oriT_pYR11
GTTTCTCGCAGAGAAACCGGTAAGTGCGCCCTC

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   4014 GenBank   WP_139690572
Name   MobA_MobL_LNQ46_RS16955_pYR11 insolico UniProt ID   _
Length   702 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 702 a.a.        Molecular weight: 77802.73 Da        Isoelectric Point: 7.8908

>WP_139690572.1 MULTISPECIES: DNA-primase RepB domain-containing protein [Gammaproteobacteria]
MAIFHLTAKTGSRGGGQSAKAKADYIQREGKYARDKDEVLHTQSGNMPSWAAGAAEVSNYWDAADLYERA
NGRLFKEVEFALPIELTLDQQRVLVDDFAKYLTEVERLPYTLAIHKGGDENPHCHLMMSERKNDGVERKK
DQWFSRYNPKKPGQGGAQKTESLKPKAWLEKTRAAWADHANRALEMAGHEARIDHRTLEAQGIERLPTIH
LGPNVVEMEGRGIRTGRADTALSIETANTEIIDLQAYRESIDHERDRQSEAGQRDRRAGGADRAAGAELG
DSRRQGRDGDRRDSKCKHKAGWRVEDPAGQSREGVGRHSQGHEGRSRGTGHGSREGRGRSESVGMEDFRS
HLDGFSAVYASAADRIVALAVPGTQDDKGGGSVATTQAQVKGDRTSQAIARQLKAMGCDLYDIGIRDSAT
GKMMNREWTLQEVVENAAWLKRMNAQGNDIYIRPAESARHGLVLVDDLSSFDLDAMKEEGREPAAVIETS
PKNYQAWVKVAANAPAEHRGAIARRLAREYDADPASADSHHYGRLAGFTNQKPKHTTKTGYQPWVLCRAS
SGQAATTGPQMVQEAGQELESKERQQEQARRLEGIETAQPRRYHRTALDEYRSEMAGLVKRFGDDLSKCD
YIAAMKLAMKGIDPDEIAKAMAEASPGLMDRKAGHEADYIERTIKKVMALPEVQKIRAELEQTQKPSGYT
PR

  Protein domains


Predicted by InterproScan.

RepB DNA-primase from phage plasmid (RepB_primase)

(419-592)

MobA/MobL family (MobA_MobL)

(21-220)


  Protein structure



No available structure.




Host bacterium

ID   6394 GenBank   NZ_CP099810
Plasmid name   pYR11 Incompatibility group   IncQ1
Plasmid size   4985 bp Coordinate of oriT [Strand]   4953..4985 [-]
Host baterium   Yersinia ruckeri strain NVI-10587

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -