Detailed information of oriT
oriT
The information of the oriT region
oriTDB ID | 105951 |
Name | oriT_CIP_106347|unnamed4 |
Organism | Shigella sonnei strain CIP_106347 |
Sequence Completeness | - |
NCBI accession of oriT (coordinates [strand]) | NZ_CP109780 (1816..1890 [-], 75 nt) |
oriT length | 75 nt |
IRs (inverted repeats) | _ |
Location of nic site | _ |
Conserved sequence flanking the nic site |
_ |
Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 75 nt
>oriT_CIP_106347|unnamed4
GTCGGGGCGAAGCCCTGACCAGGGTAATTGTAATAGCGTGCATGTATGCGCGGTATAACAATTACACATCCTGTC
GTCGGGGCGAAGCCCTGACCAGGGTAATTGTAATAGCGTGCATGTATGCGCGGTATAACAATTACACATCCTGTC
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure fileHost bacterium
ID | 6388 | GenBank | NZ_CP109780 |
Plasmid name | CIP_106347|unnamed4 | Incompatibility group | ColRNAI |
Plasmid size | 2690 bp | Coordinate of oriT [Strand] | 1816..1890 [-] |
Host baterium | Shigella sonnei strain CIP_106347 |
Cargo genes
Drug resistance gene | - |
Virulence gene | - |
Metal resistance gene | - |
Degradation gene | - |
Symbiosis gene | - |
Anti-CRISPR | - |