Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   105860
Name   oriT_I4/6O|p4 in_silico
Organism   Lactococcus formosensis strain I4/6O
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP086400 (1931..1958 [+], 28 nt)
oriT length   28 nt
IRs (inverted repeats)      1..6, 19..24  (TAAAGT..ACTTTA)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 28 nt

>oriT_I4/6O|p4
TAAAGTCTAGTAAGTTATACTTTACATG

Visualization of oriT structure



Relaxase

ID   3958 GenBank   WP_252175997
Name   mobV_LMK00_RS12070_I4/6O|p4 insolico UniProt ID   _
Length   522 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 522 a.a.        Molecular weight: 60968.31 Da        Isoelectric Point: 5.3123

>WP_252175997.1 MobV family relaxase [Lactococcus formosensis]
MAYMVARTEKRKIGSLGGYQNHVDRKTENHSNKDIDDSKTHLNYDLIGHERSKSFHEEFMDYINENRVGS
RTVRKDAVIMQDWLISSSQEFFDTLNENETKRYFETAVEFFAEKFGRENIRFATVHMDEKTPHMHMGIVP
LKDGKLTAKTIFDRNCLRMIQNELPQAFQKAGFDIQRGEPKSEKVHLHPEEYKATMRAAQQKSKEIIEQA
EKTAKTSYEELQEQSYTLWEESWDYTAEKFPDFELSGDMKPIKGEVENIVIQSFFDDFSQVERDTPRAFH
FTPRDVGVFLKEKFKQVHEYISLQAHKMAFKVSGLLKEVNDLEEVRDILNEDISQYNAILENKKQELEEI
GDEKTVANAKMKAIQELSDSIDELRGHVKDDESDIKIKQGVFSSEPTVTMPYSKYEKLKIANWNNGFEDS
LKNFREEINETLGKYRLYAHKAEQETERYKSKYDKANSDYVNMLGQKNKKEQVVTALREVAGFLPDGEWD
KAINKREMQKAQEREMPSFDFDNDRGMGGPSL

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(1-194)


  Protein structure



No available structure.




Host bacterium

ID   6297 GenBank   NZ_CP086400
Plasmid name   I4/6O|p4 Incompatibility group   -
Plasmid size   4650 bp Coordinate of oriT [Strand]   1931..1958 [+]
Host baterium   Lactococcus formosensis strain I4/6O

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -